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Report for CCDS16607.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16607.1 Public Mus musculus 2 Itpka 23 108 98 CCDS HistoryNCBI Gene:228550Re-query CCDS DB by CCDS ID:16607.1Re-query CCDS DB by GeneID:228550See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16607.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028758.7 ENSMUSP00000028758.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028758.7Link to Ensembl Protein Viewer:ENSMUSP00000028758.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000028758Re-query CCDS DB by Protein ID:ENSMUSP00000028758
Original member Current member NCBI NM_146125.2 NP_666237.1 Accepted alive Link to Nucleotide Sequence:NM_146125.2Link to Protein Sequence:NP_666237.1Re-query CCDS DB by Nucleotide ID:NM_146125Re-query CCDS DB by Protein ID:NP_666237Link to BLAST:NP_666237.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666237.1 459 Q8R071 459 100% 0 0

Chromosomal Locations for CCDS 16607.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 119742379 119742861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119749190 119749286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119749362 119749578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119749673 119749877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119750094 119750195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119750477 119750548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119750664 119750867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1380 nt):
ATGACCCTGCCCGGGCGCCCGACGGGCATGGCGCGGCCACGGGGCGCGGGGCCCTGCAGCCCCGGGCTGG
AGAGGGCTCCGCGCCGGAGCGTCGGGGAGCTGCGCCTGCTCTTCGAAGCGCGCTGCGCCGCAGTCGCCGC
TGCAGCAGCCGCAGGGGAGCCCCGGGCCCGCGGGGCCAAGCGGCGTGGGGGACAAGTGCCCAACGGGCTC
CCGCGTGCTGCCCCTGCCCCGGTGATCCCTCAGCTCACTGTGACAAGCGAGGAGGATGTGACCCCGGCCA
GCCCAGGGCCGCCAGACCAGGAGGGGAACTGGCTCCCAGCTGCGGGGTCGCACCTGCAGCAGCCACGCCG
CCTCTCCACCTCGTCCCTCTCCTCCACCGGCTCCTCGTCGCTGCTCGAGGACTCGGAGGACGATCTGCTG
AGCGACAGTGAGAGCAGGAGCCGCGGCAACGTGCAGCTGGAAACCAGCGAGGACGTGGGGCAGAAAAGCC
ACTGGCAGAAGATCCGTACCATGGTCAATCTGCCTGTCATGAGTCCTTTCAGAAAGCGCTACTCCTGGGT
GCAGTTAGCAGGGCACACAGGGAGTTTCAAAGCTGCCGGCACCAGTGGCCTGATCCTGAAACGCAGCTCG
GAGCCTGAACACTACTGCCTGGTGCGGCTGATGGCTGACGTGCTGCGTGGGTGTGTGCCGGCCTTCCATG
GCATAGTCGAGCGGGATGGTGAAAGCTACTTGCAGTTACAGGACCTGCTCGATGGCTTCGATGGGCCTTG
TGTGCTTGACTGCAAGATGGGTGTCAGAACTTACCTGGAAGAGGAGCTGACCAAAGCCCGAGAACGACCC
AAGCTGCGGAAGGACATGTATAAGAAGATGCTGGCAGTGGACCCTGAGGCACCTACTGAGGAGGAGCATG
CGCAGCGCGCCGTCACCAAACCACGCTACATGCAATGGCGCGAAGGCATCAGCTCCAGCACTACACTCGG
CTTTCGCATTGAGGGCATCAAGAAAGCCGATGGATCTTGCAGTACTGATTTCAAAACTACACGAAGCCGA
GAGCAAGTGACCCGTGTCTTTGAGGAGTTCATGCAAGGAGATGCAGAAGTGCTGAGGAGGTATCTGAACC
GCCTACAGCAGATCCGGGATACCCTGGAGATCTCTGATTTCTTTAGACGGCACGAGGTGATTGGCAGCTC
ACTCCTCTTCGTGCATGACCATTGCCATCGTGCTGGTGTGTGGCTCATCGATTTTGGCAAGACCACGCCT
CTCCCCGATGGCCAGATCCTGGATCATCGGAGGCCCTGGGAGGAGGGCAACCGTGAGGACGGCTATTTGC
TGGGGCTGGACAATCTCATTGGCATCTTGGCCAGCCTGGCTGAGAGATGA

Translation (459 aa):
MTLPGRPTGMARPRGAGPCSPGLERAPRRSVGELRLLFEARCAAVAAAAAAGEPRARGAKRRGGQVPNGL
PRAAPAPVIPQLTVTSEEDVTPASPGPPDQEGNWLPAAGSHLQQPRRLSTSSLSSTGSSSLLEDSEDDLL
SDSESRSRGNVQLETSEDVGQKSHWQKIRTMVNLPVMSPFRKRYSWVQLAGHTGSFKAAGTSGLILKRSS
EPEHYCLVRLMADVLRGCVPAFHGIVERDGESYLQLQDLLDGFDGPCVLDCKMGVRTYLEEELTKARERP
KLRKDMYKKMLAVDPEAPTEEEHAQRAVTKPRYMQWREGISSSTTLGFRIEGIKKADGSCSTDFKTTRSR
EQVTRVFEEFMQGDAEVLRRYLNRLQQIRDTLEISDFFRRHEVIGSSLLFVHDHCHRAGVWLIDFGKTTP
LPDGQILDHRRPWEEGNREDGYLLGLDNLIGILASLAER


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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