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Report for CCDS16616.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16616.1 Public Mus musculus 2 Pla2g4e 23 108 98 CCDS HistoryNCBI Gene:329502Re-query CCDS DB by CCDS ID:16616.1Re-query CCDS DB by GeneID:329502See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16616.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090071.4 ENSMUSP00000087525.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090071.4Link to Ensembl Protein Viewer:ENSMUSP00000087525.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000090071Re-query CCDS DB by Protein ID:ENSMUSP00000087525
Original member Current member NCBI NM_177845.4 NP_808513.2 Accepted alive Link to Nucleotide Sequence:NM_177845.4Link to Protein Sequence:NP_808513.2Re-query CCDS DB by Nucleotide ID:NM_177845Re-query CCDS DB by Protein ID:NP_808513Link to BLAST:NP_808513.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808513.2 875 Q50L42-1 875 100% 0 0

Chromosomal Locations for CCDS 16616.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 120167833 120168050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120168472 120168655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120170029 120170195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120171108 120171311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120171718 120171825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120173653 120173790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120174253 120174367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120176722 120176944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120181417 120181553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120182704 120182839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120184571 120184608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120185000 120185086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120185189 120185349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120186347 120186410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120187196 120187238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120188510 120188550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120189404 120189535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120191194 120191330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120200213 120200285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120244686 120244907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2628 nt):
ATGCAGTCTATTCCACACTCCGATGAAGCAGACGTGGCTGGGATGACCCACGCCTCAGAAGGCCACCATG
GCCTGGGGACCAGCATGCTTGTCCCAAAGAACCCACAAGGGGAAGAAGACAGCAAGCTAGGAAGAAACTG
CAGTGGATTTGAAGATGCACAGGACCCACAGACTGCTGTGCCCTCCTCACCTTTACTTTCCATGGCTTCT
TGCAGTTCTCAGGAGGGGTCATCTCCATGCCATCTGTTGACAGTGAGGATCATTGGCATGAAAAACGTCC
GGCAGGCTGATATACTGAGTCAGACAGACTGCTTTGTGACCCTCTGGCTGCCTACTGCCTCTCAGAAGAA
GCTGAAGACCAGAACCATCTCCAACTGCCTACACCCAGAGTGGGACGAAAGCTTCACCTTTCAGATCCAG
ACTCAAGTAAAGAATGTGCTAGAGCTGAGCGTCTGTGACGAAGACACCCTGACACAAAATGACCATCTCT
TGACAGTCCTCTATGACCTCTCTAAGCTTTGCCTCCGGAATAAAACCCATGTGAAGTTCCCACTCAACCC
AGAGGGCATGGAAGAACTGGAGGTGGAGTTCCTACTCGAAGAGAATTTCTCCTCATCAGAGACCCTCATC
ACCAACGGCGTGCTGGTGTCTCGCCAAGTCTCTTGCCTGGAGGTTCATGCAGAATCCAGGAGGCCGAGGA
AGAGGAAGAAAAACAAAGACCTTCTGGTGATGGTGACAGACTCCTTCGAGAACACCCAGCGTGTCCCGCC
TTGCCAGGAGCCCTGCTACCCCAATTCTGCCTGCTTCCACTACCCCAAGTACTCCCAGCCACAGCTTTAC
GCAGAGGCGCCTAAGAGCCACTGTAACTTTAGGCTTTGCTGCTGCGGAACACACAGGAATGACCCTGTCT
GCCAGCCCCTCAATTGCCTTTCTGATGGCCAGGTGACAACCCTGCCTGTGGGAGAGAACTATGAGCTACA
CATGAAGTCCTCACCCTGCTCTGACACACTGGATGTGCGGCTTGGATTCAGCCTGTGCCAGGAAGAGGTG
GAGTTTGTGCAGAAGCGGAAGATGGTGGTGGCCAAGACACTAAGTCAGATGCTGCAGCTGGAGGAAGGCC
TGCATGAGGATGAGGTACCGATAATAGCCATCATGGCCACAGGAGGTGGCACAAGGTCTATGGTCTCCTT
GTATGGCCACCTGCTGGGGTTGCAGAAGCTGAACTTTCTGGACGCTTCTACTTACATCACCGGCTTGTCA
GGTGCAACCTGGACTATGGCTACCTTGTACAGTGATCCTGAGTGGTCCTCCAAAAACCTGGAGACTGTTG
TCTTTGAGGCCCGGAGACATGTTGTCAAAGACAAGATGCCTGCCCTGTTCCCAGATCAGCTCTACAAATG
GCGAGAGGACCTCCAAAAGCATAGCCAGGAGGGCTATAAGACCACGTTTACAGACTTTTGGGGCAAGCTG
ATCGAGTACAGTCTGGGAGATAAAAAAAACGAATGCAAGCTGTCAGATCAGCGAGCTGCTCTGTGCAGGG
GACAGAACCCTCTGCCCATCTACCTCACCATCAATGTCAAGGATGATGTAAGCAACCAGGATTTCAGAGA
ATGGTTCGAGTTCTCCCCCTACGAGGTGGGCATGCAGAAGTACGGAGCCTTCATCCCCAGCGAGTTATTT
GGCTCCGAGTTCTTCATGGGGCGGCTGATGAAGAGGATTCCTGAGCCGGAGATGTGCTACATGCTAGGGT
TGTGGAGTAGCATCTTTTCCCTGAACCTGCTTGATGCCTGGAATTTGTCTCACACCTCAGAGGAGTTTTT
CTATAGGTGGACAAGGGAGAGACTGCATGACATCGAAGATGATCCCATCCTGCCTGAAATCCCTAGGTGT
GACGATAACCCCCTAGAGACCACAGTAGTGATCCCAACGACATGGCTGTCCAACACCTTCCGAGAAATCC
TCACACGCAGGCCCTTCGTGTCTGAGTTCCACAACTTCCTGTACGGGATGCAGCTGCATACTGACTACTT
ACAGAACAGGCAGTTCTCTATGTGGAAAGACACAGTACTGGACACCTTCCCAAACCAGCTGACACAGTTT
GCAAAACACCTGAACCTGCTGGACACTGCGTTCTTTGTCAACTCCAGCTACGCACCCCTCCTTAGGCCAG
AGAGAAAAGTCGACCTTATCATCCACCTCAATTACTGCGCAGGATCCCAGACAAAGCCCCTGAAACAAAC
CTGTGAGTACTGTACCGAGCAGAAGATCCCCTTCCCCAGCTTCTCCATCCTGGAAGATGACAACAGTCTC
AAGGAGTGCTACGTGATGGAGAATCCCCAGGAGCCCGACGCCCCCATCGTGGCTTACTTCCCACTCATCA
GTGACACCTTCCAGAAGTACAAGGCTCCAGGTGTAGAGCGAAGTCCTGACGAGCTGGAACTGGGCCAGCT
GAACATCTATGGACCAAAGTCTCCCTATGCCACCAAGGAGCTGACGTACACAGAGGCCGCCTTCGACAAG
CTGGTGAAGCTCTCAGAATATAATATCCTCAATAACAGAGATAAGCTCATTCAGGCCTTGAGACTAGCAA
TGGAGAAGAAACGCATGAGGAGCCAGTGTCCCTCCTAG

Translation (875 aa):
MQSIPHSDEADVAGMTHASEGHHGLGTSMLVPKNPQGEEDSKLGRNCSGFEDAQDPQTAVPSSPLLSMAS
CSSQEGSSPCHLLTVRIIGMKNVRQADILSQTDCFVTLWLPTASQKKLKTRTISNCLHPEWDESFTFQIQ
TQVKNVLELSVCDEDTLTQNDHLLTVLYDLSKLCLRNKTHVKFPLNPEGMEELEVEFLLEENFSSSETLI
TNGVLVSRQVSCLEVHAESRRPRKRKKNKDLLVMVTDSFENTQRVPPCQEPCYPNSACFHYPKYSQPQLY
AEAPKSHCNFRLCCCGTHRNDPVCQPLNCLSDGQVTTLPVGENYELHMKSSPCSDTLDVRLGFSLCQEEV
EFVQKRKMVVAKTLSQMLQLEEGLHEDEVPIIAIMATGGGTRSMVSLYGHLLGLQKLNFLDASTYITGLS
GATWTMATLYSDPEWSSKNLETVVFEARRHVVKDKMPALFPDQLYKWREDLQKHSQEGYKTTFTDFWGKL
IEYSLGDKKNECKLSDQRAALCRGQNPLPIYLTINVKDDVSNQDFREWFEFSPYEVGMQKYGAFIPSELF
GSEFFMGRLMKRIPEPEMCYMLGLWSSIFSLNLLDAWNLSHTSEEFFYRWTRERLHDIEDDPILPEIPRC
DDNPLETTVVIPTTWLSNTFREILTRRPFVSEFHNFLYGMQLHTDYLQNRQFSMWKDTVLDTFPNQLTQF
AKHLNLLDTAFFVNSSYAPLLRPERKVDLIIHLNYCAGSQTKPLKQTCEYCTEQKIPFPSFSILEDDNSL
KECYVMENPQEPDAPIVAYFPLISDTFQKYKAPGVERSPDELELGQLNIYGPKSPYATKELTYTEAAFDK
LVKLSEYNILNNRDKLIQALRLAMEKKRMRSQCPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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