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Report for CCDS16640.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16640.1 Public Mus musculus 2 Ckmt1 23 108 98 CCDS HistoryNCBI Gene:12716Re-query CCDS DB by CCDS ID:16640.1Re-query CCDS DB by GeneID:12716See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16640.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000317.12 ENSMUSP00000000317.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000317.12Link to Ensembl Protein Viewer:ENSMUSP00000000317.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000000317Re-query CCDS DB by Protein ID:ENSMUSP00000000317
Original member Current member EBI ENSMUST00000078222.8 ENSMUSP00000077349.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078222.8Link to Ensembl Protein Viewer:ENSMUSP00000077349.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000078222Re-query CCDS DB by Protein ID:ENSMUSP00000077349
Original member Current member NCBI NM_001355069.1 NP_001341998.1 Accepted alive Link to Nucleotide Sequence:NM_001355069.1Link to Protein Sequence:NP_001341998.1Re-query CCDS DB by Nucleotide ID:NM_001355069Re-query CCDS DB by Protein ID:NP_001341998Link to BLAST:NP_001341998.1
Original member NCBI NM_009897.3 NP_034027.1 Updated not alive Link to Nucleotide Sequence:NM_009897.3Link to Protein Sequence:NP_034027.1Re-query CCDS DB by Nucleotide ID:NM_009897Re-query CCDS DB by Protein ID:NP_034027
Current member NCBI NM_009897.4 NP_034027.1 Accepted alive Link to Nucleotide Sequence:NM_009897.4Link to Protein Sequence:NP_034027.1Re-query CCDS DB by Nucleotide ID:NM_009897Re-query CCDS DB by Protein ID:NP_034027Link to BLAST:NP_034027.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001341998.1 418 P30275 418 100% 0 0
NP_034027.1 418 P30275 418 100% 0 0

Chromosomal Locations for CCDS 16640.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 121358850 121359001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121359579 121359777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121359945 121360040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121360556 121360777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121360903 121360988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121361106 121361229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121362675 121362809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121362975 121363100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121363498 121363614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1257 nt):
ATGGCTGGTCCCTTCTCCCGTCTGCTGTCTGCCCGCCCTGGACTCAGGCTCCTGGCTTTGGCTGGAGCTG
GGTCTCTCACCGCCGGGATTCTGCTCCGCCCGGAATCTGTAGGAGCTGCCGCTGCTGAACGGAGGAGACT
GTATCCCCCGAGCGCTGAGTACCCAGACCTCCGAAAGCACAACAACTGCATGGCCAGTCACCTGACCCCA
GCAGTCTATGCACGGCTCTGCGACAAGACCACACCCACTGGTTGGACACTAGATCAGTGCATCCAGACTG
GAGTGGACAACCCTGGCCACCCCTTCATCAAGACTGTGGGCATGGTGGCTGGAGATGAGGAGACCTATGA
GGTATTTGCTGAACTGTTTGACCCTGTGATCCAAGAGCGGCATAATGGATATGACCCCAGAACAATGAAG
CACACCACTGACCTTGATGCCAGTAAAATCCGTTCTGGCTACTTTGATGAGAGGTATGTATTGTCTTCAA
GAGTCAGAACTGGCCGAAGTATCAGGGGACTCAGTCTCCCTCCAGCCTGCACTCGGGCAGAGCGAAGAGA
GGTAGAACGTGTTGTGGTGGATGCTCTGAGTGGCCTGAAGGGTGACCTGGCTGGACGGTACTATAGGCTC
AGTGAGATGACGGAGGCCGAACAGCAGCAGCTTATTGATGACCATTTTCTGTTTGATAAACCTGTGTCCC
CATTGCTGACTGCAGCAGGAATGGCTCGAGACTGGCCTGATGCTCGAGGGATCTGGCACAACAATGAGAA
GAGTTTCTTGATCTGGGTGAATGAGGAGGACCACACACGGGTCATCTCTATGGAGAAAGGCGGCAACATG
AAGAGAGTGTTTGAAAGATTCTGCCGGGGCCTCAAAGAGGTGGAGAAGCTGATCCAGGAACGAGGCTGGG
AGTTCATGTGGAATGAGCGTTTAGGCTACATCTTGACCTGTCCATCTAACCTGGGCACTGGACTTCGGGC
AGGAGTCCACATCAAACTGCCACTGCTGAGCAAAGATAACCGCTTCCCAAAGATCCTGGAGAACCTAAGA
CTGCAAAAGCGTGGAACTGGAGGAGTGGACACAGCTGCCACAGGCAGCGTCTTTGACATCTCTAATTTGG
ATCGACTTGGCAAGTCAGAGGTGGAGCTGGTGCAGCTCGTCATCGATGGGGTGAACTATTTGATTGACTG
TGAACGGCGTCTGGAGAGAGGACAGGATATTCGAATCCCTCCACCTCTTGTCCACAGCAAACATTAA

Translation (418 aa):
MAGPFSRLLSARPGLRLLALAGAGSLTAGILLRPESVGAAAAERRRLYPPSAEYPDLRKHNNCMASHLTP
AVYARLCDKTTPTGWTLDQCIQTGVDNPGHPFIKTVGMVAGDEETYEVFAELFDPVIQERHNGYDPRTMK
HTTDLDASKIRSGYFDERYVLSSRVRTGRSIRGLSLPPACTRAERREVERVVVDALSGLKGDLAGRYYRL
SEMTEAEQQQLIDDHFLFDKPVSPLLTAAGMARDWPDARGIWHNNEKSFLIWVNEEDHTRVISMEKGGNM
KRVFERFCRGLKEVEKLIQERGWEFMWNERLGYILTCPSNLGTGLRAGVHIKLPLLSKDNRFPKILENLR
LQKRGTGGVDTAATGSVFDISNLDRLGKSEVELVQLVIDGVNYLIDCERRLERGQDIRIPPPLVHSKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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