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Report for CCDS16663.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16663.1 Public Mus musculus 2 Slc28a2 23 108 98 CCDS HistoryNCBI Gene:269346Re-query CCDS DB by CCDS ID:16663.1Re-query CCDS DB by GeneID:269346See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16663.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028652.11 ENSMUSP00000028652.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028652.11Link to Ensembl Protein Viewer:ENSMUSP00000028652.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000028652Re-query CCDS DB by Protein ID:ENSMUSP00000028652
Original member Current member EBI ENSMUST00000110524.1 ENSMUSP00000106153.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110524.1Link to Ensembl Protein Viewer:ENSMUSP00000106153.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110524Re-query CCDS DB by Protein ID:ENSMUSP00000106153
Original member Current member EBI ENSMUST00000110525.7 ENSMUSP00000106154.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110525.7Link to Ensembl Protein Viewer:ENSMUSP00000106154.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110525Re-query CCDS DB by Protein ID:ENSMUSP00000106154
Original member NCBI NM_001356532.2 NP_001343461.1 Updated not alive Link to Nucleotide Sequence:NM_001356532.2Link to Protein Sequence:NP_001343461.1Re-query CCDS DB by Nucleotide ID:NM_001356532Re-query CCDS DB by Protein ID:NP_001343461
Current member NCBI NM_001356532.3 NP_001343461.1 Accepted alive Link to Nucleotide Sequence:NM_001356532.3Link to Protein Sequence:NP_001343461.1Re-query CCDS DB by Nucleotide ID:NM_001356532Re-query CCDS DB by Protein ID:NP_001343461Link to BLAST:NP_001343461.1
Original member NCBI NM_172980.3 NP_766568.1 Updated not alive Link to Nucleotide Sequence:NM_172980.3Link to Protein Sequence:NP_766568.1Re-query CCDS DB by Nucleotide ID:NM_172980Re-query CCDS DB by Protein ID:NP_766568
Current member NCBI NM_172980.4 NP_766568.1 Accepted alive Link to Nucleotide Sequence:NM_172980.4Link to Protein Sequence:NP_766568.1Re-query CCDS DB by Nucleotide ID:NM_172980Re-query CCDS DB by Protein ID:NP_766568Link to BLAST:NP_766568.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343461.1 660 O88627 660 100% 0 0
NP_766568.1 660 O88627 660 100% 0 0

Chromosomal Locations for CCDS 16663.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 122441575 122441655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122441760 122441851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122446886 122446980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122447770 122447953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122449763 122449904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122450926 122451039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122451528 122451605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122451983 122452063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122452484 122452564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122454481 122454606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122454689 122454819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122455232 122455400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122455559 122455756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122456321 122456402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122457884 122457982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122458168 122458279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122460420 122460537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1983 nt):
ATGGAGAAGTCAAAGGGAAGAAAGTCTGTTTCCCAGGCCACAGTGGAGAATTGCATGGAGAACCCAGGCC
TGGAACTCATGGAAGGCGGAAATCTTGAGCAAAGATACACACAGGAGGAAGTGACACAGGGACACAGCCT
GGAGGATGGCTTGGGGCATTCCTCTCTCTGGAGCAGGAGGATTTTTCAGCCTTTCACGAAGGCGAGAAGT
TTCTTTGAAAGACATGCTGGTTTATTCAGAAAGATCCTGCTTGGTCTCTTGTGTTTAGCTTATGCTGCCT
ACTTCCTGGCAGCGTGCATCCTGAACTTCCAGAGGGCACTGGCCTTGTTTGTCATCACCTGTCTTGTGAT
CTTCATCCTGGCTTGCCATTTTCTGAAAAAATTCTTTCCTAAAGAACAACTAAGATGCTTGAAGCCTCTG
GAAAACACCCACCTGAATCTTTGGGCAAAGCGGGTGTTCGTAGGACTCTCTGTTGTTGGCCTCATCCTCT
GGCTGGCTCTCGACACAGCTCAAAGACCAGAGCAGCTGATCTCCTTTGCAGGAATCTGTATGTTCATCCT
CATCCTCTTTGCCTGCTCCAAACACCACAGTGCGGTGTGCTGGAGGACGGTGTTTTGGGGCCTGGGCCTT
CAGTTCATCTTTGGAATTTTGGTCATCAGAACTGAACCTGGATTTAATGCATTTCAATGGCTGGGAGATC
AGATCCAGATTTTCTTGGCTTATACTGTGGAAGGATCCAGTTTTGTTTTTGGTGATACACTGGTCCAAAA
TGTTTTTGCTTTTCAGTCTCTGCCAATCATTATTTTCTTCGGATGTGTGATGTCTATTCTTTACTACCTG
GGCCTTGTGCAGTGGGTGATTCAGAAGGTTGCCTGGTTCCTGCAAATTACCATGGGTACCACTGCTGCAG
AGACCCTGGCCGTGGCAGGAAACATCTTTGTGGGGATGACAGAGGCGCCTCTGCTCATCCGTCCCTACCT
TGCAGACATGACCATCTCTGAAATCCATGCAGTCATGACTGGAGGCTTTGCTACCATAGCAGGCACAGTG
TTGGGAGCCTTCATATCCTTTGGGATTGATGCATCATCCTTGATTTCTGCCTCAGTGATGGCTGCCCCTT
GTGCACTTGCCTTGTCCAAACTGGTATATCCAGAAGTCGAAGAGTCCAAGTTCAAGAGCAAGGAGGGACT
GAAGCTGCCTCGAGGGGAAGAGAGGAATATCCTGGAAGCTGCAAGCAATGGAGCCACAGATGCCATAAGC
CTTGTTGCTAATGTTGCAGCCAACCTGATTGCCTTTCTGGCTGTATTGGCCTTCATCAATGCTACCCTCT
CTTGGCTGGGGGAAATGGTGGATATCCATGGACTCAGTTTCCAGGTCATCTGCTCCTATGTCCTAAGGCC
CATGGTTTTCATGATGGGTGTACAGTGGGCAGACTGCCCACTGGTGGCTGAGATAGTGGGAGTCAAGTTC
TTCATAAATGAATTTGTGGCCTACCAGCAACTGTCTCAGTACAAGAACAAACGTCTCTCTGGAGTAGAAG
AGTGGATCAATGGCGAGAAACAGTGGATTTCTGTGAAAGCTGAAATCATTACAACATTTTCCCTCTGTGG
ATTTGCCAATCTTAGTTCCATAGGAATCACACTGGGAGGCTTGACATCCATGATACCCCAGAGGAAGAGT
GACTTGTGCAAGATTGTGGTCAGGGCCCTCTTCACAGGTGCCTGTGTTTCCTTTATCAGTGCCTGCATGG
CAGGAATCCTCTATGTTCCCAGAGGCGCTGAAACTGACTGTGTCTCATTCCTAAACACAAATTTCACCAA
TAGAACCTATGAGACATATGTGTGCTGCAGAGAGCTTTTCCAGAGTACTTCGCTGAATGGCACCAACATG
CCTTCTTTCTCAGGCCCCTGGCAAGACAATGTGTCCAGCCTCAGGAATCTTGCTAGCTGCTGTGACCTCT
ATACCAGCACTGTGTGTGCATGA

Translation (660 aa):
MEKSKGRKSVSQATVENCMENPGLELMEGGNLEQRYTQEEVTQGHSLEDGLGHSSLWSRRIFQPFTKARS
FFERHAGLFRKILLGLLCLAYAAYFLAACILNFQRALALFVITCLVIFILACHFLKKFFPKEQLRCLKPL
ENTHLNLWAKRVFVGLSVVGLILWLALDTAQRPEQLISFAGICMFILILFACSKHHSAVCWRTVFWGLGL
QFIFGILVIRTEPGFNAFQWLGDQIQIFLAYTVEGSSFVFGDTLVQNVFAFQSLPIIIFFGCVMSILYYL
GLVQWVIQKVAWFLQITMGTTAAETLAVAGNIFVGMTEAPLLIRPYLADMTISEIHAVMTGGFATIAGTV
LGAFISFGIDASSLISASVMAAPCALALSKLVYPEVEESKFKSKEGLKLPRGEERNILEAASNGATDAIS
LVANVAANLIAFLAVLAFINATLSWLGEMVDIHGLSFQVICSYVLRPMVFMMGVQWADCPLVAEIVGVKF
FINEFVAYQQLSQYKNKRLSGVEEWINGEKQWISVKAEIITTFSLCGFANLSSIGITLGGLTSMIPQRKS
DLCKIVVRALFTGACVSFISACMAGILYVPRGAETDCVSFLNTNFTNRTYETYVCCRELFQSTSLNGTNM
PSFSGPWQDNVSSLRNLASCCDLYTSTVCA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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