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Report for CCDS16804.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16804.2 Public Mus musculus 2 Ndufaf5 23 108 98 CCDS HistoryNCBI Gene:69487Re-query CCDS DB by CCDS ID:16804.2Re-query CCDS DB by GeneID:69487See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 16804.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044825.4 ENSMUSP00000035325.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044825.4Link to Ensembl Protein Viewer:ENSMUSP00000035325.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000044825Re-query CCDS DB by Protein ID:ENSMUSP00000035325
Original member Current member NCBI NM_027093.4 NP_081369.2 Accepted alive Link to Nucleotide Sequence:NM_027093.4Link to Protein Sequence:NP_081369.2Re-query CCDS DB by Nucleotide ID:NM_027093Re-query CCDS DB by Protein ID:NP_081369Link to BLAST:NP_081369.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081369.2 343 A2APY7-1 343 100% 0 0

Chromosomal Locations for CCDS 16804.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 140170712 140170933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140172027 140172067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140177234 140177297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140181574 140181621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140183898 140184001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140187744 140187783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140188715 140188912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140193583 140193643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140202866 140202949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140203288 140203370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 140203532 140203618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1032 nt):
ATGCTGCGAAAGGTCGTTCTTTTGCGCCTCTGCCCACTGCTTGGCCGGCCAGCGGTCTCTGCATCGAGCG
GCAGTCGCAGGGAGGTCGCTTCTGGTGTCCCTCCTTCGGGCAGCACCTCGCCCAGAGCCCTAAACATCTT
CGACAGGGAATTGAAGAGGAAGCAGAAGAATTGGGCCGCCCGGCAGCCCGACCCCATGAAATTTGACTAC
CTGAAGGAGGAGGTTGGAAGTCGGATTGCAGACCGTGTTTATGACATAGCCAGAGACTTTCCCCTTGCCC
TGGACATAGGATGTGGAAGAGGCTACATAGCACAACATTTGGATAAGGAGACTGTGGGAAAGATCTTCCA
AACAGACATTGCAGAGCATGCTTTGAAAAATTCTTTAGAAACAGATATTCCTACTGTGAATATTTTAGCT
GATGAAGAATTCCTTCCCTTCCAAGAAAACACGTTTGACCTGGTGGTTAGCAGCTTAAGTTTGCACTGGG
TGAATGACCTCCCGAGAGCACTTGAACAGATTCATTATGTCTTAAAACCAGATGGGGTGTTTGTTGGTGC
AATGTTTGGAGGCGACACACTCTATGAACTCCGGTGTTCATTACAGCTAGCAGAAACTGAAAGGGAAGGA
GGCTTTTCCCCACATATTTCTCCTTTCACTGCTGTCAATGACCTAGGGCATCTGCTGGGAAGAGCTGGCT
TCAACACTCTGACTGTGGATACTGATGAAATTCAAGTTAACTATCCTGGAATGTTTGAATTGATGGAAGA
TTTAAAAGGTATGGGTGAGAGCAACTGTTCTTGGAACAGAAAAGCCCTGCTGCACCGAGACACAATGCTG
GCAGCTGCAGCGGTTTACAGAGAAATGTACCGGAATGAGGATGGTTCCATACCTGCCACCTTTCAGATCT
ACCACATGATAGGATGGAAATACCATGACTCTCAGGCAAGGCCAGCTGAAAGAGGTTCTGCAACCGTGTC
ATTTGGAGAGCTAGCAAAACTAAATGATGTCATGTCGCATGAGAAAAAATAA

Translation (343 aa):
MLRKVVLLRLCPLLGRPAVSASSGSRREVASGVPPSGSTSPRALNIFDRELKRKQKNWAARQPDPMKFDY
LKEEVGSRIADRVYDIARDFPLALDIGCGRGYIAQHLDKETVGKIFQTDIAEHALKNSLETDIPTVNILA
DEEFLPFQENTFDLVVSSLSLHWVNDLPRALEQIHYVLKPDGVFVGAMFGGDTLYELRCSLQLAETEREG
GFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNYPGMFELMEDLKGMGESNCSWNRKALLHRDTML
AAAAVYREMYRNEDGSIPATFQIYHMIGWKYHDSQARPAERGSATVSFGELAKLNDVMSHEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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