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Report for CCDS16853.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16853.1 Public Mus musculus 2 Cst5 23 108 98 CCDS HistoryNCBI Gene:58214Re-query CCDS DB by CCDS ID:16853.1Re-query CCDS DB by GeneID:58214See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16853.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047008.8 ENSMUSP00000043520.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047008.8Link to Ensembl Protein Viewer:ENSMUSP00000043520.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000047008Re-query CCDS DB by Protein ID:ENSMUSP00000043520
Original member Current member EBI ENSMUST00000109938.7 ENSMUSP00000105564.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109938.7Link to Ensembl Protein Viewer:ENSMUSP00000105564.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109938Re-query CCDS DB by Protein ID:ENSMUSP00000105564
Original member NCBI NM_021405.2 NP_067380.1 Updated not alive Link to Nucleotide Sequence:NM_021405.2Link to Protein Sequence:NP_067380.1Re-query CCDS DB by Nucleotide ID:NM_021405Re-query CCDS DB by Protein ID:NP_067380
Current member NCBI NM_021405.3 NP_067380.1 Accepted alive Link to Nucleotide Sequence:NM_021405.3Link to Protein Sequence:NP_067380.1Re-query CCDS DB by Nucleotide ID:NM_021405Re-query CCDS DB by Protein ID:NP_067380Link to BLAST:NP_067380.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067380.1 148 Q9JM84-1 148 100% 0 0

Chromosomal Locations for CCDS 16853.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 149405366 149405614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 149407281 149407394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 149409970 149410053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (447 nt):
ATGGCAAGTTTGCTGAGCCCCTCGATGCCTGTGTTGGCTGCTGTGGCCTTGACACTGACCCTGGCTGTGA
TCCCTGAAGCCAGTACTAATGCTGAAGCCAAGCAGGTGGTATTAGGTGGAGTGGAGCCAGCTGACCCTAA
GGATAAGGAGGTGCAGAAAGTGGTAAAGTTTGCTGTTAGAACCTACAATGATATGGACAATGACCTGTAT
CTTAGCAAGCCAATACGACTGATGAGCGCCAGCCAGCAGGTTGTGGCTGGGAAGAACTACTACTTGAAAA
TTGAGCTAGGCCGAACCACATGTACCAAAACTGAGTCTAATTTGGTTGATTGTCCCTTCAATGAACAGCC
AGATCAGCAGAAGAGGGTCATCTGTAATTTCCAGATCAACGTTGCACCTTGGCTGAACAAGATGTCCATG
ACAAACTTCAACTGTTACAATTTCTGA

Translation (148 aa):
MASLLSPSMPVLAAVALTLTLAVIPEASTNAEAKQVVLGGVEPADPKDKEVQKVVKFAVRTYNDMDNDLY
LSKPIRLMSASQQVVAGKNYYLKIELGRTTCTKTESNLVDCPFNEQPDQQKRVICNFQINVAPWLNKMSM
TNFNCYNF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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