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Report for CCDS16858.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16858.1 Public Mus musculus 2 Apmap 23 108 98 CCDS HistoryNCBI Gene:71881Re-query CCDS DB by CCDS ID:16858.1Re-query CCDS DB by GeneID:71881See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16858.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046399.6 ENSMUSP00000040840.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046399.6Link to Ensembl Protein Viewer:ENSMUSP00000040840.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000046399Re-query CCDS DB by Protein ID:ENSMUSP00000040840
Original member Current member NCBI NM_027977.3 NP_082253.1 Accepted alive Link to Nucleotide Sequence:NM_027977.3Link to Protein Sequence:NP_082253.1Re-query CCDS DB by Nucleotide ID:NM_027977Re-query CCDS DB by Protein ID:NP_082253Link to BLAST:NP_082253.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082253.1 415 Q9D7N9 415 100% 0 0

Chromosomal Locations for CCDS 16858.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 150583979 150584188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150585763 150585955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150586381 150586515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150586992 150587166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150588903 150589019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150590033 150590125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150594302 150594417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150600244 150600360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150608388 150608479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGAGCGAAGCGGACGGGCTGCGGCAGCGTCGGCCCCTGCGGCCGCAGGTCGTCACGGACGATGGCCAGG
TCCCGGAGGTCAAGGAGGGCAGTTCCTTTAGTGGCAGAGTCTTCAGAATGACCTTCTTGATGCTGGCTGT
GTCCCTTGCCATTCCCCTACTTGGAGCCATGATGCTGTTGGAGTCCCCCATAGATCCTCAGAGTTTCAGC
TTCAAAGAACCCCCTTTCATGTTTGGTGTTCTGCATCCAAATACGAAGTTGCGGCAAGCAGAAAGGCTAT
TTGAAAACCAACTTAGTGGACCAGAATCCATAGTAAATATTGGGGATGTGCTGTTTACTGGTACAGCAGA
TGGCCGAGTTGTAAAACTTGAAAATGGAGAAATAGAGACCATCGCTCGGTTCGGTTCAGGCCCTTGCAAA
ACCCGAGATGATGAACCTACCTGTGGGAGACCCCTGGGCATCCGGGCAGGGCCCAATGGGACTCTTTTTG
TGGTTGATGCGTACAAGGGACTGTTCGAAGTAAATCCTCAGAAACGTTCAGTGAAACTGCTGCTATCCTC
TGAGACGCCCATTGAGGGCAAGAAGATGTCCTTTGTGAATGACCTCACTGTTACTCGGGATGGAAGGAAG
ATTTATTTCACGGATTCCAGCAGCAAGTGGCAGAGACGAGACTACCTGCTTCTGGTGATGGAGGCCACTG
ATGATGGGCGCCTGTTAGAGTATGATACTGTGACGAAAGAAGTGAAGGTTTTGTTGGACCAGTTGCAGTT
CCCTAATGGAGTTCAGCTCTCTCCTGAGGAAGACTTTGTCCTAGTGGCAGAGACAACTATGGCCAGGATA
CGAAGAGTCTATGTGTCTGGCCTGATGAAAGGAGGGGCAGATATGTTTGTGGAGAACATGCCTGGATTTC
CTGACAATATCCGGCCTAGCAGCTCTGGCGGATACTGGGTTGCTGCTGCAACCATTCGTGCTAACCCTGG
GTTTTCCATGTTGGATTTCTTATCTGACAAGCCTTTTATTAAGAGAATGATTTTTAAGATGTTCAGTCAG
GAGACAGTGATGAAGTTTGTGCCACGATATAGCCTGGTCCTAGAAGTCAGTGACAGTGGTGCCTTCCGGA
GAAGCCTGCATGATCCTGATGGACAGGTGGTCACCTATGTGAGTGAGGCGCATGAACATGATGGATACCT
GTACCTGGGCTCCTTCAGATCTCCCTTCATCTGCAGACTCAGTCTCCAGTCTATTTAG

Translation (415 aa):
MSEADGLRQRRPLRPQVVTDDGQVPEVKEGSSFSGRVFRMTFLMLAVSLAIPLLGAMMLLESPIDPQSFS
FKEPPFMFGVLHPNTKLRQAERLFENQLSGPESIVNIGDVLFTGTADGRVVKLENGEIETIARFGSGPCK
TRDDEPTCGRPLGIRAGPNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTVTRDGRK
IYFTDSSSKWQRRDYLLLVMEATDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETTMARI
RRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSMLDFLSDKPFIKRMIFKMFSQ
ETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFICRLSLQSI


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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