NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1700.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1700.1 Public Homo sapiens 2 HS1BP3 24 110 108 CCDS HistoryNCBI Gene:64342Re-query CCDS DB by CCDS ID:1700.1Re-query CCDS DB by GeneID:64342See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1700.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304031.8 ENSP00000305193.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000304031.8Link to Ensembl Protein Viewer:ENSP00000305193.3Re-query CCDS DB by Nucleotide ID:ENST00000304031Re-query CCDS DB by Protein ID:ENSP00000305193
Original member Current member NCBI NM_022460.4 NP_071905.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022460.4Link to Protein Sequence:NP_071905.3Re-query CCDS DB by Nucleotide ID:NM_022460Re-query CCDS DB by Protein ID:NP_071905Link to BLAST:NP_071905.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071905.3 392 Q53T59 392 100% 0 0

Chromosomal Locations for CCDS 1700.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 20618987 20619245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20623896 20624031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20624732 20624892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20638436 20638652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20640973 20641180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20645340 20645505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 20651032 20651063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1179 nt):
ATGCAGTCCCCGGCGGTGCTCGTCACCTCCAGGCGACTTCAGAATGCCCACACTGGCCTCGACCTGACTG
TGCCCCAGCACCAGGAGGTACGGGGCAAGATGATGTCTGGACACGTGGAGTACCAGATCCTGGTGGTGAC
CCGTCTGGCTGCGTTCAAGTCGGCCAAGCACAGGCCCGAGGATGTCGTCCAGTTCTTGGTCTCCAAAAAG
TACAGCGAGATTGAGGAGTTTTACCAGAAACTGAGCAGTCGTTATGCAGCAGCCAGCCTCCCCCCACTAC
CCAGGAAGGTCCTGTTTGTTGGGGAGTCTGACATCCGGGAGAGGAGAGCCGTGTTCAATGAGATCCTGCG
CTGTGTCTCCAAGGATGCCGAGTTGGCAGGCAGCCCAGAGCTGCTAGAGTTCTTAGGTACCAGATCCCCA
GGGGCTGCAGGGCTCACCAGCAGAGATTCCTCTGTCCTGGATGGCACAGACAGTCAGACAGGGAATGATG
AAGAGGCTTTCGACTTTTTTGAGGAGCAAGACCAAGTGGCAGAAGAGGGTCCGCCCGTCCAGAGCCTGAA
GGGCGAGGATGCTGAGGAATCCTTGGAGGAGGAGGAGGCGCTGGACCCTCTGGGCATTATGCGCTCCAAG
AAGCCCAAGAAACATCCCAAAGTGGCCGTGAAAGCCAAGCCCTCGCCCCGGCTCACCATCTTTGACGAGG
AGGTGGACCCTGATGAGGGGCTCTTTGGCCCGGGCAGGAAGCTGTCTCCACAGGACCCCTCGGAGGACGT
GTCATCCGTGGACCCCCTGAAGCTATTTGATGATCCTGACCTCGGCGGGGCCATCCCCCTGGGTGACTCC
CTCCTGCTGCCAGCCGCCTGTGAGAGTGGAGGGCCCACACCCAGCCTCAGCCACAGGGACGCCTCCAAGG
AACTGTTCAGAGTTGAAGAGGACTTGGACCAGATTCTGAACCTGGGAGCTGAGCCCAAACCCAAGCCCCA
GCTTAAGCCCAAGCCACCAGTGGCAGCTAAGCCGGTGATACCCAGAAAACCAGCTGTTCCCCCCAAAGCG
GGCCCGGCTGAAGCTGTGGCTGGGCAGCAGAAGCCGCAGGAGCAGATCCAAGCCATGGACGAGATGGACA
TCTTGCAGTACATCCAGGACCACGATACACCAGCCCAGGCCGCCCCCAGCCTCTTCTGA

Translation (392 aa):
MQSPAVLVTSRRLQNAHTGLDLTVPQHQEVRGKMMSGHVEYQILVVTRLAAFKSAKHRPEDVVQFLVSKK
YSEIEEFYQKLSSRYAAASLPPLPRKVLFVGESDIRERRAVFNEILRCVSKDAELAGSPELLEFLGTRSP
GAAGLTSRDSSVLDGTDSQTGNDEEAFDFFEEQDQVAEEGPPVQSLKGEDAEESLEEEEALDPLGIMRSK
KPKKHPKVAVKAKPSPRLTIFDEEVDPDEGLFGPGRKLSPQDPSEDVSSVDPLKLFDDPDLGGAIPLGDS
LLLPAACESGGPTPSLSHRDASKELFRVEEDLDQILNLGAEPKPKPQLKPKPPVAAKPVIPRKPAVPPKA
GPAEAVAGQQKPQEQIQAMDEMDILQYIQDHDTPAQAAPSLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH