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Report for CCDS17029.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17029.1 Public Mus musculus 2 Svs4 23 108 98 CCDS HistoryNCBI Gene:20941Re-query CCDS DB by CCDS ID:17029.1Re-query CCDS DB by GeneID:20941See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17029.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017142.2 ENSMUSP00000017142.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017142.2Link to Ensembl Protein Viewer:ENSMUSP00000017142.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000017142Re-query CCDS DB by Protein ID:ENSMUSP00000017142
Original member Current member NCBI NM_009300.3 NP_033326.1 Accepted alive Link to Nucleotide Sequence:NM_009300.3Link to Protein Sequence:NP_033326.1Re-query CCDS DB by Nucleotide ID:NM_009300Re-query CCDS DB by Protein ID:NP_033326Link to BLAST:NP_033326.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033326.1 113 P18419 113 100% 0 0

Chromosomal Locations for CCDS 17029.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 164277073 164277338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164278210 164278285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (342 nt):
ATGAATTCTACCAGTTTGTTCCTCTTTTCTCTGCTTCTCCTTCTGGTGACAGGAGCCATTGGGAAGAAAA
CTAAGGAAAAATTCTTGCAGTCGGAAGAAACTGTCAGAGAGAGCTTCTCGATGGGAAGCAGAGGCCATAT
GTCAAGAAGTTCTGAGCCAGAGGTATTTGTTAGGCCACAGGACTCCATCGGTGACGAAGCTTCTGAGGAA
ATGAGTAGTAGTAGTAGTAGTAGAAGAAGAAGTAAGATTATCTCTAGCAGTTCTGATGGTTCTAATATGG
AAGGTGAGAGTTCATATTCAAAGAGAAAGAAGAGCCGGTTTTCTCAAGATGCACTCGAGTGA

Translation (113 aa):
MNSTSLFLFSLLLLLVTGAIGKKTKEKFLQSEETVRESFSMGSRGHMSRSSEPEVFVRPQDSIGDEASEE
MSSSSSSRRRSKIISSSSDGSNMEGESSYSKRKKSRFSQDALE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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