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Report for CCDS1704.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1704.1 Public Homo sapiens 2 UBXN2A 24 110 108 CCDS HistoryNCBI Gene:165324Re-query CCDS DB by CCDS ID:1704.1Re-query CCDS DB by GeneID:165324See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1704.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000309033.5 ENSP00000312107.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000309033.5Link to Ensembl Protein Viewer:ENSP00000312107.4Re-query CCDS DB by Nucleotide ID:ENST00000309033Re-query CCDS DB by Protein ID:ENSP00000312107
Original member Current member EBI ENST00000404924.5 ENSP00000385525.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000404924.5Link to Ensembl Protein Viewer:ENSP00000385525.1Re-query CCDS DB by Nucleotide ID:ENST00000404924Re-query CCDS DB by Protein ID:ENSP00000385525
Original member Current member NCBI NM_181713.4 NP_859064.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181713.4Link to Protein Sequence:NP_859064.2Re-query CCDS DB by Nucleotide ID:NM_181713Re-query CCDS DB by Protein ID:NP_859064Link to BLAST:NP_859064.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_859064.2 259 P68543-1 259 100% 0 0

Chromosomal Locations for CCDS 1704.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 23958315 23958355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23971276 23971414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23976969 23977075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23982896 23983033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23984673 23984831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23999672 23999867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (780 nt):
ATGAAAGACGTAGATAACCTCAAAAGTATAAAAGAAGAATGGGTTTGTGAAACAGGATCTGATAATCAAC
CTCTTGGTAATAATCAACAATCAAATTGTGAATATTTTGTTGATAGCCTTTTTGAGGAAGCTCAGAAGGT
TAGTTCCAAATGTGTGTCTCCCGCTGAACAGAAGAAACAGGTAGATGTAAATATAAAATTATGGAAAAAC
GGATTCACCGTCAACGACGATTTCAGAAGTTATTCCGATGGTGCCAGTCAGCAGTTTTTGAACTCCATCA
AAAAGGGGGAATTACCTTCAGAATTACAGGGAATTTTTGATAAAGAAGAGGTGGACGTTAAAGTTGAAGA
CAAGAAAAATGAAATATGTTTGTCTACGAAGCCTGTGTTCCAGCCCTTTTCAGGACAGGGTCACAGACTA
GGAAGTGCCACACCAAAAATTGTTTCTAAAGCAAAGAATATTGAAGTTGAAAATAAAAATAATTTGTCTG
CTGTTCCACTGAACAACTTGGAACCCATTACTAATATACAGATCTGGTTGGCCAATGGAAAAAGGATTGT
CCAGAAATTTAACATTACTCATAGAGTAAGCCATATCAAAGACTTCATTGAAAAATACCAAGGATCTCAA
AGAAGTCCTCCGTTTTCCCTGGCAACAGCTCTTCCTGTCCTCAGGTTGCTAGATGAGACACTCACACTGG
AAGAAGCAGATTTACAGAATGCTGTCATCATTCAGAGACTCCAAAAAACTGCATCTTTTAGAGAACTTTC
AGAGCACTGA

Translation (259 aa):
MKDVDNLKSIKEEWVCETGSDNQPLGNNQQSNCEYFVDSLFEEAQKVSSKCVSPAEQKKQVDVNIKLWKN
GFTVNDDFRSYSDGASQQFLNSIKKGELPSELQGIFDKEEVDVKVEDKKNEICLSTKPVFQPFSGQGHRL
GSATPKIVSKAKNIEVENKNNLSAVPLNNLEPITNIQIWLANGKRIVQKFNITHRVSHIKDFIEKYQGSQ
RSPPFSLATALPVLRLLDETLTLEEADLQNAVIIQRLQKTASFRELSEH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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