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Report for CCDS17121.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17121.1 Public Mus musculus 2 Bcas1 23 108 98 CCDS HistoryNCBI Gene:76960Re-query CCDS DB by CCDS ID:17121.1Re-query CCDS DB by GeneID:76960See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17121.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000013667.2 ENSMUSP00000013667.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000013667.2Link to Ensembl Protein Viewer:ENSMUSP00000013667.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000013667Re-query CCDS DB by Protein ID:ENSMUSP00000013667
Original member Current member NCBI NM_029815.2 NP_084091.2 Accepted alive Link to Nucleotide Sequence:NM_029815.2Link to Protein Sequence:NP_084091.2Re-query CCDS DB by Nucleotide ID:NM_029815Re-query CCDS DB by Protein ID:NP_084091Link to BLAST:NP_084091.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084091.2 633 Q80YN3 633 100% 0 0

Chromosomal Locations for CCDS 17121.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 170348074 170348148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 170349182 170349463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 170356248 170356313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 170366364 170366528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 170370450 170370491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 170378723 170378929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 170384189 170384326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 170387163 170387207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 170387797 170387952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 170406274 170406848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 170418607 170418685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 170420591 170420662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1902 nt):
ATGGGAAACCAGATGAGCGTCCCACTAAGGCCTGGAGACCAGGAGCACGACCCAGGAGCAGACACTTGCA
AGGTGACGTCAGACAATGAGTGTGTTCAGAATGGGAACCCAGTTGTGCTGTCCACTCGTGTAATTCAACA
CTATGAGGAAGTCGACTTGGGAATCAGCAGCTCCAAGGATAATGTGGCTACTTCTTCCCCCAAGACAATG
GAGGCCCAGGCTGTGGGCGATGCCAGCGGAAAGAATCTTGGGAAAGAAGCCAAGACCAAGGCACCAGCTG
CTAGATCCCATTTTTTCTTGACACTCTCTCGGCCTGTACCAGGACGTCCCGGGGACCAAGGCACGGATTC
ATCGGCTGCATCAGGGAGGTTTGATGTCAGCCCAAGCGCAGCGCCTGAGAACAAAGACCCAAGTGAGCAC
GGGGCACTTCCGGTGGCAGCTGCACCAGGGCAGGCTCCAGATAAAACCCCAGGGTGCCCCGAGGCCAAGC
AGCAGACCCTCCCTGCCACCGGCCCATTGGCACCCTCACCACCTGAGTCCCAGGCAGAAGCCCCGGCCCA
GGACAAGGATTTCGGCTTTTTGAACAGATTCTTTAAACTGGACAAAGGAAGAGAAAGCGCGCCGGTGAAC
AGCCAGCCCAAAGAAGCGAAAGGCTCGGAAGACCCAGAACAGGCCACAGAGGCTCCTGCCGTGCCAGGGA
ATCCCCATGGTGTCTCTGCAGGGGAGGACATAGTCGACAGCGAGCAGAGAGGACAAGACGTTGACACTCT
GAGTTATTCTGTCCCTGGGGATCCAGAGGTGCCGGGGACCACGAAGGAGGACCCGCAGGTGGTCGATACC
ACAGAGAACAGCAGCTCCATCATGAGCTTCTTCAAGACACTGGTTTCACCTAACAAGACTGAAACAAAGA
AGGACCCAGAAGACACGAAGGCAACCAAGGCAGACAGTGTCTGTGATGGACACGCTGCTGGCCAGAAGAT
GTCGGAGACGCAGGCTAAAAGCAAGAAGAAGCGCCTGGACAGCCCCAGGCTAGGACTCTCCTTTAGAAAG
CTCTTTAGGCACAAGGATACTGAGAACTCACCCACGACTTCAGCCAATCTCAAGTCGGACAAAGCCAACT
TCACACCCCAGGAGACCCGAGGGAAGACAAAGGCTACCAAAAGCTGCAGCCCCCCACCGCCACCTCCTGA
ACCCACCAGCGAAGGGAGAGACAGCGGCAAGGAGAAGGCAGGGCCCACCTCACTACCGCTGGGAAAGTTG
TTTTGGAAGAAGTCAGTTAAGGAGGATACACTTTCCACAGGTGCAGAGGAGAACGCGGTGTGTGAGTCAC
CAGTAGAGACCGTAAGGCTTGAGGAAGTAGAATCCAGCTTACAAACTGTGGATCTCAGTGAAGAGACCCA
GCCTGAACCCACAGACGTAAAAGTCAAAGAAGAAAGCAAACCCCGGAAGACCCCTCTGATGGCGTTTCTC
AGACAAATGTCAGTGAGATCGAGCGAAGGGATCCCCCGCTCGGAAGAAAGTAACGTGAAAGACTCCAGCT
GCCAAACGTCAAACTCCGTGGAAAAGACGCCCTCACCCCCAGAGCCAGAGCCCGCGGGAACAGCTCAGAA
AAACAAGGAGACCTCCTCCTCGAAGGACAAGAAATCAGTGGACAAGAAGTCAGCGACTGAGAACAGCAAG
CAGAAGAACGGCAAACAGGAAGTCAGAGAGCCGGCGCCGTGTGTGCAGCCGCCCACAGTGGAGGCAAACG
CAATGCAGACTGGGGACAAGACCCCAAAGAAGTCTGAGAAGCGGCGACAGTCCCTCGGGGGCTTCCTGAA
GGGCCTGGGACCAAAGCGGATGTCGGATGCTCAGGTGCAAACGGACCCGGTCTCCATCGGACCAGTTGGA
AAATCCAAGTAA

Translation (633 aa):
MGNQMSVPLRPGDQEHDPGADTCKVTSDNECVQNGNPVVLSTRVIQHYEEVDLGISSSKDNVATSSPKTM
EAQAVGDASGKNLGKEAKTKAPAARSHFFLTLSRPVPGRPGDQGTDSSAASGRFDVSPSAAPENKDPSEH
GALPVAAAPGQAPDKTPGCPEAKQQTLPATGPLAPSPPESQAEAPAQDKDFGFLNRFFKLDKGRESAPVN
SQPKEAKGSEDPEQATEAPAVPGNPHGVSAGEDIVDSEQRGQDVDTLSYSVPGDPEVPGTTKEDPQVVDT
TENSSSIMSFFKTLVSPNKTETKKDPEDTKATKADSVCDGHAAGQKMSETQAKSKKKRLDSPRLGLSFRK
LFRHKDTENSPTTSANLKSDKANFTPQETRGKTKATKSCSPPPPPPEPTSEGRDSGKEKAGPTSLPLGKL
FWKKSVKEDTLSTGAEENAVCESPVETVRLEEVESSLQTVDLSEETQPEPTDVKVKEESKPRKTPLMAFL
RQMSVRSSEGIPRSEESNVKDSSCQTSNSVEKTPSPPEPEPAGTAQKNKETSSSKDKKSVDKKSATENSK
QKNGKQEVREPAPCVQPPTVEANAMQTGDKTPKKSEKRRQSLGGFLKGLGPKRMSDAQVQTDPVSIGPVG
KSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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