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Report for CCDS17190.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17190.1 Public Mus musculus 2 Arfgap1 23 108 98 CCDS HistoryNCBI Gene:228998Re-query CCDS DB by CCDS ID:17190.1Re-query CCDS DB by GeneID:228998See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17190.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029092.12 ENSMUSP00000029092.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029092.12Link to Ensembl Protein Viewer:ENSMUSP00000029092.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000029092Re-query CCDS DB by Protein ID:ENSMUSP00000029092
Original member Current member NCBI NM_145760.3 NP_665703.2 Accepted alive Link to Nucleotide Sequence:NM_145760.3Link to Protein Sequence:NP_665703.2Re-query CCDS DB by Nucleotide ID:NM_145760Re-query CCDS DB by Protein ID:NP_665703Link to BLAST:NP_665703.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_665703.2 414 Q9EPJ9-1 414 100% 0 0

Chromosomal Locations for CCDS 17190.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 180971055 180971114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180971574 180971683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180971984 180972155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180972695 180972795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180973461 180973547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180974060 180974156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180976307 180976363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180977320 180977352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180979171 180979227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180979661 180979720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180980398 180980474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180981037 180981370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1245 nt):
ATGGCCAGCCCAAGAACCAGGAAAGTTCTTAAGGAAGTCCGGGCACAGGATGAGAATAATGTTTGCTTTG
AGTGTGGTGCGTTCAATCCTCAGTGGGTCAGCGTGACTTATGGCATCTGGATCTGCCTGGAATGCTCTGG
GAGACACCGTGGGCTTGGGGTGCACCTCAGCTTTGTGCGCTCTGTTACAATGGACAAATGGAAGGACATT
GAGCTGGAGAAGATGAAGGCTGGTGGGAATGCTAAGTTCCGAGAGTTCCTGGAGACACAGGACGACTATG
AGCCTAGCTGGTCACTGCAGGACAAGTACAGCAGCAGAGCCGCGGCGCTCTTCAGGGATAAGGTGGCTAC
TTTGGCAGAAGGTAAAGAGTGGTCTCTGGAGTCATCGCCTGCACAGAACTGGACCCCACCTCAGCCCAAG
ACACTGCAGTTCACTGCCCACCGAGCCTCTGGCCAGCCACAGAGTGCAGCCGCCTCTGGGGACAAGGCTT
TTGAAGATTGGCTGAATGATGACCTGGGTTCCTACCAGGGTGCTCAGGAGAATCGCTATGTAGGGTTTGG
GAACACAGTGCCACCTCAGAAGAGAGAAGATGACTTCCTCAACAATGCCATGTCATCGCTGTACTCGGGC
TGGAGCAGTTTTACCACTGGGGCGAGCAAGTTTGCATCTGCAGCAAAGGAGGGTGCTACAAAATTTGGAT
CTCAAGCAAGTCAGAAGGCTTCGGAGTTGGGCCACAGCCTGAATGAGAATGTTCTCAAGCCTGCACAGGA
GAAGGTGAAGGAGGGAAGGATTTTTGATGATGTGTCCAGTGGGGTCTCTCAGTTGGCATCCAAGGTCCAG
GGAGTTGGCAGTAAGGGATGGCGTGATGTCACTACTTTCTTCTCTGGGAAAGCCGAAGACTCTTCAGACA
GACCCTTAGAGGGCCACAGCTACCAGAACAGCAGTGGAGACAACTCTCAGAACAGCAACATAGACCAGAG
CTTCTGGGAGACCTTTGGGAGTGCTGAGCCCCCCAAGGCCAAGTCCCCAAGCAGTGACAGCTGGACCTGT
GCAGATGCTTCAACAGGGAGGAGGAGCTCGGACAGCTGGGACGTTTGGGGCTCAGGTTCCGCATCCAACA
ACAAGAACAGCAATAGCGATGGCTGGGAGAGTTGGGAGGGAGCCAGTGGGGAGGGCAGGGCAAAGGCCAC
CAAGAAGGCAGCCCCATCCACGGCTGATGAGGGCTGGGACAACCAGAACTGGTAG

Translation (414 aa):
MASPRTRKVLKEVRAQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDI
ELEKMKAGGNAKFREFLETQDDYEPSWSLQDKYSSRAAALFRDKVATLAEGKEWSLESSPAQNWTPPQPK
TLQFTAHRASGQPQSAAASGDKAFEDWLNDDLGSYQGAQENRYVGFGNTVPPQKREDDFLNNAMSSLYSG
WSSFTTGASKFASAAKEGATKFGSQASQKASELGHSLNENVLKPAQEKVKEGRIFDDVSSGVSQLASKVQ
GVGSKGWRDVTTFFSGKAEDSSDRPLEGHSYQNSSGDNSQNSNIDQSFWETFGSAEPPKAKSPSSDSWTC
ADASTGRRSSDSWDVWGSGSASNNKNSNSDGWESWEGASGEGRAKATKKAAPSTADEGWDNQNW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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