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Report for CCDS17192.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17192.1 Public Mus musculus 2 Chrna4 23 108 98 CCDS HistoryNCBI Gene:11438Re-query CCDS DB by CCDS ID:17192.1Re-query CCDS DB by GeneID:11438See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17192.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067120.13 ENSMUSP00000066338.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067120.13Link to Ensembl Protein Viewer:ENSMUSP00000066338.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000067120Re-query CCDS DB by Protein ID:ENSMUSP00000066338
Original member NCBI NM_015730.5 NP_056545.3 Updated not alive Link to Nucleotide Sequence:NM_015730.5Link to Protein Sequence:NP_056545.3Re-query CCDS DB by Nucleotide ID:NM_015730Re-query CCDS DB by Protein ID:NP_056545
Current member NCBI NM_015730.6 NP_056545.3 Accepted alive Link to Nucleotide Sequence:NM_015730.6Link to Protein Sequence:NP_056545.3Re-query CCDS DB by Nucleotide ID:NM_015730Re-query CCDS DB by Protein ID:NP_056545Link to BLAST:NP_056545.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056545.3 629 O70174 629 100% 0 0

Chromosomal Locations for CCDS 17192.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 181024754 181024879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181028198 181029572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181033920 181034029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181034109 181034153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181037419 181037570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181038992 181039073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1890 nt):
ATGGAGATCGGGGGCTCCGGGGCGCCGCCGCCGCTGCTGCTCCTGCCGCTCCTGCTGCTCTTAGGGACCG
GCCTCTTGCCTGCTAGCAGCCACATAGAGACCCGGGCCCATGCGGAGGAGCGGCTCCTGAAGAGACTCTT
CTCTGGCTACAACAAGTGGTCTCGGCCAGTAGCCAATATCTCAGATGTGGTCCTTGTCCGCTTTGGCTTG
TCGATTGCTCAGCTCATTGATGTGGATGAGAAAAACCAGATGATGACGACCAACGTGTGGGTGAAGCAGG
AGTGGCATGACTACAAACTGCGCTGGGACCCTGGTGACTACGAGAATGTCACCTCCATCCGCATCCCATC
TGAACTCATCTGGAGGCCTGACATCGTCCTCTACAACAACGCGGACGGGGACTTTGCAGTCACCCACCTA
ACCAAAGCCCACCTGTTCTATGATGGGCGTGTGCAGTGGACACCCCCGGCCATCTATAAGAGCTCCTGCA
GCATCGACGTCACCTTCTTCCCCTTCGACCAGCAGAACTGTACCATGAAGTTTGGGTCCTGGACCTACGA
CAAGGCCAAGATTGACTTGGTGAGCATGCACAGCCGTGTGGACCAACTGGACTTCTGGGAAAGTGGGGAG
TGGGTCATTGTGGATGCCGTGGGCACCTACAACACCAGGAAGTATGAATGCTGTGCCGAGATCTATCCTG
ACATCACCTACGCCTTCATCATCCGCCGACTGCCACTGTTCTACACCATCAACCTTATCATCCCGTGCCT
GCTCATCTCCTGCCTCACCGTGCTGGTCTTCTATCTGCCCTCGGAGTGCGGCGAGAAGGTCACGCTGTGC
ATCTCGGTGCTGCTTTCTCTCACCGTCTTCCTGCTGCTCATCACCGAGATCATCCCGTCCACCTCGCTGG
TCATCCCGCTCATCGGCGAGTACCTGCTCTTCACCATGATCTTCGTCACCCTCTCCATTGTCATCACGGT
CTTCGTGCTCAATGTACACCACCGCTCACCACGCACACACACCATGCCCGCCTGGGTGCGCAGAGTCTTC
CTGGACATTGTGCCCCGTCTCCTCTTCATGAAGCGCCCATCTGTGGTCAAAGACAACTGCCGGAGACTTA
TCGAATCCATGCACAAGATGGCCAACGCCCCTCGTTTCTGGCCAGAGCCTGAGAGTGAGCCCGGCATCTT
GGGTGACATCTGCAACCAAGGCCTGTCACCTGCCCCAACTTTCTGCAACCGCATGGACACAGCAGTCGAG
ACCCAGCCTACATGCAGGTCACCCTCCCACAAGGTCCCTGACTTGAAGACATCAGAGGTTGAGAAGGCCA
GTCCCTGTCCATCACCTGGCTCTTGTCACCCACCCAATAGCAGTGGGGCCCCAGTGCTCATCAAAGCCAG
GTCCCTGAGCGTCCAGCATGTGCCCAGCTCCCAGGAAGCAGCCGAGGGCAGCATCCGCTGCCGGTCTCGG
AGTATCCAGTACTGTGTTTCCCAAGATGGAGCTGCTTCCCTGACTGAGAGCAAGCCCACTGGCTCCCCAG
CCTCCCTGAAGACCCGTCCATCCCAGCTTCCAGTGTCAGACCAGACCTCTCCATGCAAATGCACATGCAA
GGAACCATCTCCTGTGTCCCCCATCACTGTGCTCAAGGCTGGAGGCACCAAAGCACCTCCCCAACACCTG
CCCCTGTCACCAGCCCTGACACGGGCAGTAGAAGGCGTCCAGTACATTGCAGACCACCTCAAGGCAGAAG
ACACAGACTTCTCGGTGAAGGAGGACTGGAAATACGTGGCCATGGTCATTGACCGAATCTTCCTCTGGAT
GTTCATCATTGTCTGCCTTCTGGGCACTGTGGGACTCTTCCTGCCTCCATGGTTGGCTGGTATGATCTAG

Translation (629 aa):
MEIGGSGAPPPLLLLPLLLLLGTGLLPASSHIETRAHAEERLLKRLFSGYNKWSRPVANISDVVLVRFGL
SIAQLIDVDEKNQMMTTNVWVKQEWHDYKLRWDPGDYENVTSIRIPSELIWRPDIVLYNNADGDFAVTHL
TKAHLFYDGRVQWTPPAIYKSSCSIDVTFFPFDQQNCTMKFGSWTYDKAKIDLVSMHSRVDQLDFWESGE
WVIVDAVGTYNTRKYECCAEIYPDITYAFIIRRLPLFYTINLIIPCLLISCLTVLVFYLPSECGEKVTLC
ISVLLSLTVFLLLITEIIPSTSLVIPLIGEYLLFTMIFVTLSIVITVFVLNVHHRSPRTHTMPAWVRRVF
LDIVPRLLFMKRPSVVKDNCRRLIESMHKMANAPRFWPEPESEPGILGDICNQGLSPAPTFCNRMDTAVE
TQPTCRSPSHKVPDLKTSEVEKASPCPSPGSCHPPNSSGAPVLIKARSLSVQHVPSSQEAAEGSIRCRSR
SIQYCVSQDGAASLTESKPTGSPASLKTRPSQLPVSDQTSPCKCTCKEPSPVSPITVLKAGGTKAPPQHL
PLSPALTRAVEGVQYIADHLKAEDTDFSVKEDWKYVAMVIDRIFLWMFIIVCLLGTVGLFLPPWLAGMI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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