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Report for CCDS17216.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17216.1 Public Mus musculus 2 Uckl1 23 108 98 CCDS HistoryNCBI Gene:68556Re-query CCDS DB by CCDS ID:17216.1Re-query CCDS DB by GeneID:68556See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17216.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057816.14 ENSMUSP00000050398.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057816.14Link to Ensembl Protein Viewer:ENSMUSP00000050398.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000057816Re-query CCDS DB by Protein ID:ENSMUSP00000050398
Original member Current member NCBI NM_026765.3 NP_081041.2 Accepted alive Link to Nucleotide Sequence:NM_026765.3Link to Protein Sequence:NP_081041.2Re-query CCDS DB by Nucleotide ID:NM_026765Re-query CCDS DB by Protein ID:NP_081041Link to BLAST:NP_081041.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081041.2 548 Q91YL3 548 100% 0 0

Chromosomal Locations for CCDS 17216.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 181569311 181569390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181569468 181569624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181569696 181569803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181569909 181570031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181570133 181570195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181570309 181570402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181570500 181570598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181572470 181572486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181573074 181573135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181573215 181573404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181574212 181574283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181574369 181574539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181574651 181574757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181574847 181575037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181581856 181581968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1647 nt):
ATGGCTGCGCCGCCGGCCTCAATGAGCGCCGCCCCTTCGCCCCTGCAGTCTGCTGTGGCCCCAGACGTGC
CTGGCCGCCAGGCCGAGCAGAATGAAACGGCGTGCGAGGACCGCAGCAATGCAGGGACCTTGGACAGACT
TCTCCCACCAGTGGGTACTGGGCGCTCACCCCGGAAGCGCACCACCAGCCAGTGCAAGTCAGAACCACCC
CTGCTTCGCACAAGCAAACGTACCATCTACACAGCTGGGCGGCCACCATGGTACAATGAACATGGTACAC
AGTCCAAGGAGGCCTTTGCTATTGGCTTAGGAGGTGGCAGTGCATCTGGGAAGACCACTGTGGCCAGAAT
GATCATTGAGGCACTAGATGTGCCCTGGGTGGTCCTGTTGTCCATGGACTCCTTCTATAAGGTTCTGACG
CAGCAGCAGCAGGAACAGGCTGCCTGTAACAATTTCAACTTTGACCACCCTGATGCCTTTGACTTCGATC
TCATCATTTCCACCCTTAAGAAGCTAAAACAGGGCAGGAGTGTCCAAGTGCCCATCTATGATTTCACTAC
CCATAGCCGGAAAAAGGACTGGAAAACCCTGTATGGTGCGAATGTCATCATCTTTGAGGGTATCATGGCC
TTTGCTGATAAGACACTGCTGGAGCTCCTGGACATGAAGATCTTTGTGGACACGGACTCTGATATCCGAC
TGGTTCGGCGTCTGCGCAGGGACATCAGCGAACGAGGCCGGGACATTGAGGGTGTCATTAAGCAGTACAA
CAAGTTTGTCAAACCTGCATTTGATCAGTATATCCAGCCTACCATGCGGCTGGCAGATATTGTGGTGCCC
AGAGGGAGCGGGAACACAGTAGCCATTGACCTGATTGTGCAGCATGTTCACAGCCAGCTGGAAGAGCGCG
AACTCAGCGTCAGGGCCGCGTTGGCCTCCGCTCACCAGTGCCATCCCCTCCCCCAGACACTGAGTGTCCT
CAAGAGTACACCGCAGGTCCGAGGCATGCACACCATCATCAGGGACAAGGAGACTAGCCGGGATGAATTC
ATCTTCTACTCCAAAAGACTGATGCGGCTGCTTATTGAACATGCACTGTCCTTCCTACCCTTTCAGGACT
GCACTGTACAGACTCCACAGGGGCAGGACTACGTGGGAAAGTGCTACGCTGGAAAACAGATCACCGGCGT
GTCAATTCTGCGTGCAGGAGAAACCATGGAGCCTGCACTGCGTGCCGTGTGCAAGGATGTGCGCATCGGC
ACTATCCTCATCCAGACCAACCAGCTCACAGGGGAGCCTGAGCTCCATTACCTGAGGCTTCCCAAGGATA
TCAGTGATGACCATGTGATCCTGATGGACTGCACAGTATCCACAGGTGCTGCGGCCATGATGGCTGTACG
TGTACTCCTGGACCATGATGTGCCTGAGGACAAGATCTTTTTGCTGTCCCTGCTCATGGCAGAGATGGGT
GTGCATTCTGTGGCCTACGCTTTCCCACGCGTGAGAATCATCACCACAGCTGTGGACAAGCGTGTCAATG
ACCTTTTCCGTATCATCCCAGGCATTGGGAACTTTGGTGATCGCTACTTTGGGACAGATGCAGTCCCTGA
TGGCAGTGATGATGATGAGGCAGCCACTGTGGGTTAG

Translation (548 aa):
MAAPPASMSAAPSPLQSAVAPDVPGRQAEQNETACEDRSNAGTLDRLLPPVGTGRSPRKRTTSQCKSEPP
LLRTSKRTIYTAGRPPWYNEHGTQSKEAFAIGLGGGSASGKTTVARMIIEALDVPWVVLLSMDSFYKVLT
QQQQEQAACNNFNFDHPDAFDFDLIISTLKKLKQGRSVQVPIYDFTTHSRKKDWKTLYGANVIIFEGIMA
FADKTLLELLDMKIFVDTDSDIRLVRRLRRDISERGRDIEGVIKQYNKFVKPAFDQYIQPTMRLADIVVP
RGSGNTVAIDLIVQHVHSQLEERELSVRAALASAHQCHPLPQTLSVLKSTPQVRGMHTIIRDKETSRDEF
IFYSKRLMRLLIEHALSFLPFQDCTVQTPQGQDYVGKCYAGKQITGVSILRAGETMEPALRAVCKDVRIG
TILIQTNQLTGEPELHYLRLPKDISDDHVILMDCTVSTGAAAMMAVRVLLDHDVPEDKIFLLSLLMAEMG
VHSVAYAFPRVRIITTAVDKRVNDLFRIIPGIGNFGDRYFGTDAVPDGSDDDEAATVG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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