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Report for CCDS17224.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17224.1 Public Mus musculus 2 Pcmtd2 23 108 98 CCDS HistoryNCBI Gene:245867Re-query CCDS DB by CCDS ID:17224.1Re-query CCDS DB by GeneID:245867See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17224.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029116.13 ENSMUSP00000029116.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029116.13Link to Ensembl Protein Viewer:ENSMUSP00000029116.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029116Re-query CCDS DB by Protein ID:ENSMUSP00000029116
Original member Current member NCBI NM_153594.3 NP_705822.1 Accepted alive Link to Nucleotide Sequence:NM_153594.3Link to Protein Sequence:NP_705822.1Re-query CCDS DB by Nucleotide ID:NM_153594Re-query CCDS DB by Protein ID:NP_705822Link to BLAST:NP_705822.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705822.1 359 Q8BHD8 359 100% 0 0

Chromosomal Locations for CCDS 17224.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 181842399 181842705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181844396 181844498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181846468 181846639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181851586 181851709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181854938 181855311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGGGCGGTGCTGTGAGTGCTGGGGAGGACAACGATGAGCTCATTGATAACTTGAAGGAAGCCCAGTACA
TCCGGACGGACTTAGTAGAGCAGGCTTTCCGCGCTATTGATCGAGCAGATTATTATCTTGAAGAATTTAA
AGAAAATGCATACAAAGACTTGGCATGGAAACATGGAAATATTCATCTCTCAGCCCCGTGCATCTACTCG
GAGGTGATGGAGGCTCTGGATCTGCAGCCTGGGCTTTCATTTCTGAATTTGGGCAGTGGTACTGGCTACC
TCAGCTCCATGGTGGGGCTCATTCTAGGTCCTTTCGGCGTGAACCACGGGGTGGAGCTTCATTCAGATGT
CACTGAGTACGCGAAGCAGAAACTGGATGTCTTCATCAGAACCAGCGACAGCTTTGACAAATTTGACTTC
TGTGAACCTTCCTTTGTAACTGGAAATTGCCTGGAGATTGCTCCAGATTGTTGTCAGTATGATCGTGTTT
ATTGTGGGGCTGGTGTGCAGAAAGAACATGAAGAGTACATGAAAAATCTTCTCAAAGTTGGAGGCATCCT
TGTCATGCCCTTGGAAGAGAAGTTGACCAAGATAACACGCACAGGTCCTTCTGCTTGGGAGACAAAAAAG
ATTCTGGCTGTTTCCTTTGCCCCTCTGGTCCAGCCTTGCCGTTCGGAATCAGGACAGTCCAGACTTGTCC
AGCTACCACCACCAGCCGTGCGCAGCCTACAGGACCTGGCCCGGCTTGCTATCCGTGGCAGCATCAAGAG
GGCTATGCGACAGGAAGCCACAAGAGGAGGTGGCCTGAAGAACACACCTATGTTTAAAAGAAGGCGAGTC
CGTCGCCGCAGAATGGAGACCATTGTCTTTTTGGACAAAGAGGTTTTTGCCAGTCGAATTTCCAACCCCT
CTGATGACACCAGCTGTGAGGATGCAGAGGAGGATCGGCGGGAAGTGGCAGAGAGGACCTTACAGGAGAC
CAAGCCTGAGCCACCAGTGAACTTCCTTCGTCAGAGGGTATTGCGCCTCCCATTGCCTGATCCCCTGAAG
TACTACCTGCTGTATTACAGGGAAAAGTGA

Translation (359 aa):
MGGAVSAGEDNDELIDNLKEAQYIRTDLVEQAFRAIDRADYYLEEFKENAYKDLAWKHGNIHLSAPCIYS
EVMEALDLQPGLSFLNLGSGTGYLSSMVGLILGPFGVNHGVELHSDVTEYAKQKLDVFIRTSDSFDKFDF
CEPSFVTGNCLEIAPDCCQYDRVYCGAGVQKEHEEYMKNLLKVGGILVMPLEEKLTKITRTGPSAWETKK
ILAVSFAPLVQPCRSESGQSRLVQLPPPAVRSLQDLARLAIRGSIKRAMRQEATRGGGLKNTPMFKRRRV
RRRRMETIVFLDKEVFASRISNPSDDTSCEDAEEDRREVAERTLQETKPEPPVNFLRQRVLRLPLPDPLK
YYLLYYREK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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