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Report for CCDS17281.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17281.2 Public Mus musculus 3 Mecom 23 108 98 CCDS HistoryNCBI Gene:14013Re-query CCDS DB by CCDS ID:17281.2Re-query CCDS DB by GeneID:14013See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 17281.1
The coding region has been updated to represent an alternate 5' exon and and alternate shorter exon in the middle that is more supported by the available transcript and protein data. The update changes the protein length from 1032 aa to 718 aa. Longer variants are also present in mouse, but current mRNA evidence is partial.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 17281.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000172694.7 ENSMUSP00000134303.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172694.7Link to Ensembl Protein Viewer:ENSMUSP00000134303.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172694Re-query CCDS DB by Protein ID:ENSMUSP00000134303
Original member NCBI NM_007963.2 NP_031989.2 Updated not alive Link to Nucleotide Sequence:NM_007963.2Link to Protein Sequence:NP_031989.2Re-query CCDS DB by Nucleotide ID:NM_007963Re-query CCDS DB by Protein ID:NP_031989
Current member NCBI NM_007963.3 NP_031989.2 Accepted alive Link to Nucleotide Sequence:NM_007963.3Link to Protein Sequence:NP_031989.2Re-query CCDS DB by Nucleotide ID:NM_007963Re-query CCDS DB by Protein ID:NP_031989Link to BLAST:NP_031989.2

Chromosomal Locations for CCDS 17281.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 29952716 29952850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 29956306 29956489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 29957313 29957549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 29960973 29961117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 29963059 29963228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 29965449 29965526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 29966653 29966819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 29977259 29977346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 29979601 29979985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 29985341 29985494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 29987030 29987177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 29993486 29993702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 29997646 29997694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2157 nt):
ATGAAGAGTGAAGAGGACCCGCACGAACCCATGGCGCCTGACATCCACGAAGAACGGCAGCACCGCTGTG
AGGACTGTGACCAGCTCTTTGAATCCAAGGCAGAGCTAGCCGATCACCAGAAGTTCCCATGCAGCACACC
TCACTCGGCCTTCTCCATGGTGGAGGAGGACTTGCAACAAAACCTGGAGAGTGAGAGCGATCTCCGAGAG
ATCCATGGCAACCAGGACTGTAAGGAATGTGACCGAGTTTTCCCCGATCTGCAAAGCTTGGAGAAGCACA
TGCTGTCACATACTGAGGAGAGGGAATACAAGTGTGATCAGTGTCCCAAGGCATTTAACTGGAAGTCCAA
TTTAATTCGCCACCAGATGTCACATGACAGTGGAAAGCACTATGAGTGTGAAAACTGTGCCAAGGTTTTC
ACGGACCCTAGCAACCTTCAGCGACACATTCGATCTCAGCATGTTGGTGCCCGGGCTCATGCTTGCCCCG
AGTGTGGTAAAACATTTGCCACTTCGTCAGGCCTCAAACAGCACAAGCACATCCACAGCAGTGTGAAGCC
CTTTATCTCATTCTCTCAATCAATGTACCCATTTCCTGATAGAGACTTGAGGTCGTTACCTTTGAAAATG
GAGCCCCAATCACCAAGTGAAGTTAAGAAACTGCAGAAGGGAAGCTCTGAGTCCCCTTTTGACCTCACCA
CTAAGAGAAAGGATGAGAAGCCCTTGACTTCAGGCCCCTCGAAGCCTTCAGGAACACCAGCCACAAGCCA
AGACCAGCCCCTGGATCTAAGTATGGGCAGTAGGGGTAGAGCCAGTGGGACAAAGTTGACTGAGCCTCGA
AAAAACCATGTGTTTGGGGAAAAGAAAGGAAGCAACATGGATACTAGGCCATCTTCAGATGGCTCCTTGC
AGCATGCCAGACCCACTCCCTTCTTCATGGACCCCATTTATAGAGTAGAGAAAAGAAAGTTAACTGACCC
GCTTGAAGCTTTGAAAGAAAAATACTTGAGACCTTCTCCAGGATTCTTGTTTCACCCGCAAATGTCAGCA
ATTGAGAACATGGCAGAAAAGCTGGAAAGCTTCAGCGCCCTCAAACCTGAGGCCAGCGAGCTCCTGCAGT
CCGTGCCCTCCATGTTCAGCTTCCGAGCTCCTCCCAACACCCTGCCAGAGAACCTGCTGCGGAAGGGGAA
AGAGCGCTACACCTGCAGGTACTGTGGCAAGATATTTCCAAGGTCTGCGAACCTAACACGGCACTTGAGA
ACCCACACAGGAGAGCAACCTTACAGATGCAAATACTGTGATAGATCATTCAGCATTTCTTCCAACCTGC
AGCGACATGTGCGCAACATCCACAACAAGGAGAAGCCATTTAAGTGTCATTTATGTGACAGATGTTTTGG
TCAACAAACCAATCTTGACAGACACCTGAAGAAACATGAGAACGGCAACATGTCTGGGACGGCAACGTCC
TCGCCTCACTCAGAGCTAGAAAGCGCAGGCGCAATCCTGGATGACAAAGAAGATGCGTACTTTACAGAGA
TCCGCAATTTCATCGGGAACAGCAACCATGGTAGCCAGTCTCCTCGGAACATGGAAGAGAGGATGAATGG
CAGTCACTTCAAGGATAAAAAGGCTTTGGCAACCAGCCAAAATTCAGATTTATTGGATGATGAAGAAGTA
GAAGATGAGGTGTTGTTGGATGAGGAGGATGAAGACAATGATATTCCTGGAAAGCCCAGAAAGGAGCTAG
GGGTGACTCGTTTAGACGAGGAGATCCCGGAGGATGACTACGAAGAAGCTGGTGCCCTGGAGATGAGCTG
TAAGGCGTCCCCGGTGAGGTATAAAGAGGAAGACTATAAATCTGGCCTTTCTGCTCTAGATCACATAAGG
CACTTCACAGATAGCCTCAAAATGAGGGAAATGGAAGAGAATCAATACACTGACGCTGAGCTGTCCTCCA
TTAGTTCTTCTCATGTGCCAGAGGAGCTTAAACAGACGTTACACAGAAAGTCCAAATCACAGGCATATGC
TATGATGTTGTCACTGTCTGACAAGGATTCCCTCCATCCCACCTCCCACAGTTCCTCCAACGTGTGGCAC
AGCATGGCAAGGGCTGCAGCAGAATCCAGTGCCATCCAGTCCATAAGCCATGTATGA

Translation (718 aa):
MKSEEDPHEPMAPDIHEERQHRCEDCDQLFESKAELADHQKFPCSTPHSAFSMVEEDLQQNLESESDLRE
IHGNQDCKECDRVFPDLQSLEKHMLSHTEEREYKCDQCPKAFNWKSNLIRHQMSHDSGKHYECENCAKVF
TDPSNLQRHIRSQHVGARAHACPECGKTFATSSGLKQHKHIHSSVKPFISFSQSMYPFPDRDLRSLPLKM
EPQSPSEVKKLQKGSSESPFDLTTKRKDEKPLTSGPSKPSGTPATSQDQPLDLSMGSRGRASGTKLTEPR
KNHVFGEKKGSNMDTRPSSDGSLQHARPTPFFMDPIYRVEKRKLTDPLEALKEKYLRPSPGFLFHPQMSA
IENMAEKLESFSALKPEASELLQSVPSMFSFRAPPNTLPENLLRKGKERYTCRYCGKIFPRSANLTRHLR
THTGEQPYRCKYCDRSFSISSNLQRHVRNIHNKEKPFKCHLCDRCFGQQTNLDRHLKKHENGNMSGTATS
SPHSELESAGAILDDKEDAYFTEIRNFIGNSNHGSQSPRNMEERMNGSHFKDKKALATSQNSDLLDDEEV
EDEVLLDEEDEDNDIPGKPRKELGVTRLDEEIPEDDYEEAGALEMSCKASPVRYKEEDYKSGLSALDHIR
HFTDSLKMREMEENQYTDAELSSISSSHVPEELKQTLHRKSKSQAYAMMLSLSDKDSLHPTSHSSSNVWH
SMARAAAESSAIQSISHV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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