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Report for CCDS17284.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17284.1 Public Mus musculus 3 Mynn 23 108 98 CCDS HistoryNCBI Gene:80732Re-query CCDS DB by CCDS ID:17284.1Re-query CCDS DB by GeneID:80732See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17284.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000192715.5 ENSMUSP00000141951.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000192715.5Link to Ensembl Protein Viewer:ENSMUSP00000141951.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000192715Re-query CCDS DB by Protein ID:ENSMUSP00000141951
Original member Current member NCBI NM_030557.3 NP_085034.2 Accepted alive Link to Nucleotide Sequence:NM_030557.3Link to Protein Sequence:NP_085034.2Re-query CCDS DB by Nucleotide ID:NM_030557Re-query CCDS DB by Protein ID:NP_085034Link to BLAST:NP_085034.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_085034.2 610 Q99MD8-1 610 100% 0 0

Chromosomal Locations for CCDS 17284.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 30603535 30603800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 30607037 30607830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 30608985 30609144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 30611441 30611619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 30612469 30612552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 30613552 30613638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 30616551 30616813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1833 nt):
ATGCAGTATTCACACCACTGTGAGCACCTTTTAGAGAGACTGAATAAGCAACGGGAAGCGGGATTTCTTT
GCGACTGTACCGTAGTGATTGGAGAATTCCAGTTTAAGGCGCATAGGAATGTGCTTGCCTCCTTTAGTGA
GTATTTTGGGGCGATCTACAGAAGCACTTCTGAGAACAATGTTTTTCTTGATCAGAGTCAGGTGAAGGCT
GACGGATTTCAGAAACTGTTGGAGTTTATATATACAGGAACTTTAAATCTCGACAGTTGGAATGTTAAAG
AAATCCATCAGGCTGCTGACTATCTCAAAGTAGAAGAGGTAGTAACTAAATGTAAAATAAAGATGGAGGA
TTTCGCTTTCATTGCTAGTCCCTCTTCTACCGAAATATCTAGTATTACTGGAAACATCGAATTGAATCAA
CAGGCCTGTCTTCTTACCCTGCGAGATTATAACAATCGGGAGAAATCAGAAGTCTCCACGGACTCAGTTC
AGGCAAACCCTAAACCACGGGCATTGACAAAGAAATCGTCTCAAAGTAAAAAGAAGAAGAAGGCCTTCAG
TTCTCAGAAACCAGGGCAGAGCAAAGCAGTGCAGTACCCCAGTGACGTTCTAGAGAGCGCGTCTGTGGAA
TTATTCCTAGAGACGAGCAAGTTGTCCTCACCTGTAGTAGAGCAAATCATTCAAGGAAATGACAGTTCAG
AACTTGAGTTGACCTCGGTTGTGGAAAATACTTTTCCAACCCAAGATATTGTGCAAACTGTTACAGTCAA
ACGGAAACGTCGGAAATCACAGTCACATTGTGCTCTGAAAGAACACTCCATGTCTAACATAGCCAGTGTA
AAGAGTCCATATGAGCTGGAGAACGCCGGGGAAGAGCTGGATGCAAGGTTTTCCAAGGCCAAGCCAATGT
GCAACACTTGCGGGAAGGTGTTTTCGGAAGCCAGCAGCCTGCGAAGGCACATGAGAATACACAAAGGAGT
CAAGCCCTACGTCTGCCACTTGTGTGGAAAGGCATTTACCCAGTGCAACCAACTAAAGACGCATGTGAGG
ACTCACACAGGGGAAAGGCCATATAAATGTGAACTGTGTGATAAAGGATTTGCTCAGAAATGCCAGCTGG
TCTTCCATAGTCGCATGCATCATGGTGAGGAAAAACCCTATAAATGTGATGTGTGCAATTTACAGTTTGC
AACTTCTAGCAACCTCAAGATTCATGCAAGGAAACACAGTGGAGAAAAGCCATATGTTTGTGATAGATGT
GGGCAGAGATTTGCCCAGGCCAGCACGCTGACCTATCATGTCCGCAGACACACTGGAGAAAAGCCTTATG
TGTGCGACACCTGCGGAAAGGCATTTGCTGTCTCTAGCTCTCTTATCACTCATTCTCGGAAACACACAGG
TGAAAAACCATACATATGTGGTATTTGTGGGAAAAGTTTTATTTCCTCAGGAGAGCTCAACAAACACTTT
CGATCCCATACAGGAGAACGACCATTTATCTGTGAATTATGTGGAAACTCATACACAGACATTAAAAACT
TAAAGAAGCATAAAACAAAGGTCCATTCTGGTACTGATAAAAATCCAGATTGCAGTGTAGATGACCATGC
TGTAAGCGAACAAGACTCCGTACAGAGAAGTCCCTTGTCAGAAACACTAGATGTGAAGCCTTCTGATATG
ACTCTACCCTTAGCGCTTCCACTTGGGACTGAAGACCACCAGATGCTCCTGCCTGTCACGGACAGTCAGT
CTCCTGCATCAGACACGCTGCTGAGGTCCACGGTGAATGGGTACTCGGAACCGCAGTTGATTTTTTTACA
ACAGTTGTACTGA

Translation (610 aa):
MQYSHHCEHLLERLNKQREAGFLCDCTVVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNVFLDQSQVKA
DGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKIKMEDFAFIASPSSTEISSITGNIELNQ
QACLLTLRDYNNREKSEVSTDSVQANPKPRALTKKSSQSKKKKKAFSSQKPGQSKAVQYPSDVLESASVE
LFLETSKLSSPVVEQIIQGNDSSELELTSVVENTFPTQDIVQTVTVKRKRRKSQSHCALKEHSMSNIASV
KSPYELENAGEELDARFSKAKPMCNTCGKVFSEASSLRRHMRIHKGVKPYVCHLCGKAFTQCNQLKTHVR
THTGERPYKCELCDKGFAQKCQLVFHSRMHHGEEKPYKCDVCNLQFATSSNLKIHARKHSGEKPYVCDRC
GQRFAQASTLTYHVRRHTGEKPYVCDTCGKAFAVSSSLITHSRKHTGEKPYICGICGKSFISSGELNKHF
RSHTGERPFICELCGNSYTDIKNLKKHKTKVHSGTDKNPDCSVDDHAVSEQDSVQRSPLSETLDVKPSDM
TLPLALPLGTEDHQMLLPVTDSQSPASDTLLRSTVNGYSEPQLIFLQQLY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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