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Report for CCDS17304.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17304.1 Public Mus musculus 3 Ccdc39 23 108 98 CCDS HistoryNCBI Gene:51938Re-query CCDS DB by CCDS ID:17304.1Re-query CCDS DB by GeneID:51938See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17304.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029222.7 ENSMUSP00000029222.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029222.7Link to Ensembl Protein Viewer:ENSMUSP00000029222.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000029222Re-query CCDS DB by Protein ID:ENSMUSP00000029222
Original member NCBI NM_026222.2 NP_080498.1 Updated not alive Link to Nucleotide Sequence:NM_026222.2Link to Protein Sequence:NP_080498.1Re-query CCDS DB by Nucleotide ID:NM_026222Re-query CCDS DB by Protein ID:NP_080498
Current member NCBI NM_026222.3 NP_080498.1 Accepted alive Link to Nucleotide Sequence:NM_026222.3Link to Protein Sequence:NP_080498.1Re-query CCDS DB by Nucleotide ID:NM_026222Re-query CCDS DB by Protein ID:NP_080498Link to BLAST:NP_080498.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080498.1 937 Q9D5Y1 937 100% 0 0

Chromosomal Locations for CCDS 17304.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 33813047 33813200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33814190 33814266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33814353 33814529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33814655 33814795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33815412 33815518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33815912 33816071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33816828 33816951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33819808 33820016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33821377 33821514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33825391 33825555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33826455 33826649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33830025 33830157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33830657 33830760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33832528 33832719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33836716 33836844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33836940 33837032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33837806 33837964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33839078 33839224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33841069 33841188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 33844105 33844194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2814 nt):
ATGTGCAGTGAGTTCTTGTCAGAGCTGCACTGGGAAGATGGGTTCGCCATCCCCGTGGCCAATCAGGAGA
ACAAGATCCTGGAGGATCAGTTGGCAAAGCTCCGAGAGGAAAAATCAAACTTGCAAGATCAGCTTCATGA
CTATGAAGAACGAATTAATTCTATGACTTCTCACCTTAAAAATGTGAATCAGGAATTTTTATTTACACAG
TCTCTTTACAAAGCAAGGGAGAGTGAGATCGAGAGCGAAGAACATTTTAAGGCCATTGCTGAAAGAGAGC
TGGGCCGAGTCAAGAATGAGACCCAACTGCTGGAGAAGGAGATGGCGATCATCCGGGAGCGCAAGAGCCA
AATGGAAAACAATATATTTAAAACTACTCAAAAGCTGGATGACTTGAAATGTCAGATGAACTGGGACCAG
CAAGCCTTGGAGGCCTGGCTGGAAGAATCGGCTCACAAAGACAGTGACTCTCTGACCCTTCAGAAGTACT
CTCAGCAAGACGATAACAAAATCAGGGCCCTGACTCTGCAGTTAGAAAAGCTGACCATGGAGTATAACGA
GAAGAGGAAGCTTCTAGACAGTGAACTGACAGAGACGCTAAGTGCGCAGTTAGAATTAGATAAAGCTGCA
CAGGATTTCCGGAAGATTCACTTAGAACGGCAGGAGCTCATTCAGCAGTGGGAGAACACCATTGAGCAGA
TGCAGAGGCGGGATCAGGAGATAGACAACTGTGCCCTGGCATTATCACGAATAAAGCAGGAAGCAAGAGA
AAAAGAAGGCGTGGTGAAAGAGAAGATCAAGTTTCTGGAAAATGAGGTTGAGAACAACATAGAATACGAG
AGAAAAATTTCTGTTGCTGAGCGGAAAGTGTCCAAGTGCAGGATGGACTACCAGCGTCACGAAGGCAACA
GAAGTCAGCTGAAGGATGAGCTGGATACTTTAAAAACCACTCTCAACAGAACATCCAGTGACTTACAAGC
TCTGAGGAAAAACATTTCCAAAGTAAAGAAGGACATCTTTGACGAAACATTAAGATTACAAAAACTTAAA
CATCACAATGAGGTTGTAAAACATAAATTAAAGATGATAACTGAGAAGACCCTATCTATTGAAGAGAAAG
CTACCAACATGGAAGACATGCTGAAGGAGGAGGAGAAAGGCCTGAAGGAAGTGGAGGTTCAATTGGGCAT
AGTAAAAGACGTGTTATTTAAGAAAGTCCAAGAGTTACAGAACGAGATAGCGAAAGAGAAAGCCCTGGTA
TCAGAAATTGAAGGAACCCGTTCCTCCCTGAAACATCTTAACAAACAGTTACACAAACTGGATTTTGAAA
CCCTGAAGCAGCAGGAAATTATGTACAGTCAGGATTTTTACATTCAGCAAGTAGAACGCAGAATGTCACG
ATTAAAAGGAGAAATTAATTCAGAGGAAAAGCAAGCCCTTGAAGCAAAAATCCTTGAACTTAAGAAGACA
ATGGATGAGAAAAAATCCACACTTTCCCTTTTGGAATCCCAGATCAAGAAGCTCCATAATGACCTCTACT
TCATTAAGAAATCAAATGGTAAAAACAATGATGAGAAAGAGTCTCTCATGAATAAAATAAGTGAACTGAA
CCTTTTTATTGACAGATCTGAGAAGGAACTGAGCAAAGCCAAAGCTGTGAAAGAGGATATGATGATCGAG
GACAATCTTTTAAAGCTTCAAGTTAAACGTGCTCGAGAATTGCTTTACAGCAAGGCAGAGGAAGTCCTTT
CTCTAGAGAAAAGGAAACAGCAGCTGGGCAAAGACATGGAAGAGAGAGCTGAAGAAATTAAAGTGCACAA
AGCCATGCTTACCTCACAGATCAGATGTGTTGAACAGCAGCGAAAAACTATGAGTTCTGAATTTCATGAG
CGGCTAAGTAAAATTGATAAGCTTAAGAATAGATATGAAATTCTTACTGTTGTCATGCTGCCTCCTGAAG
GAGAAGAGGAGAAAACACAGTCCTATTATGTAATAAAGGCTGCTCAAGAAAAAGAAGAACTTCAAAGGGA
AGGTGATAGCTTGGATGCTAAGATCAACAAAGCTGAAAAAGAAATCTATGCTTTGCAAAACACCTTGCAA
GTACTTAACAGCTGCAACAGCAATTATAAGCAATCTTTCAAAAAAGTGACTCCGTCAAGTGATGAGTATG
CATTAAAAATTCAACTAGAAGAACAAAAAAGAACTGCAGATGAGAGATACAGATGCAAACAAAGGCAGAT
CAGAGAACTTCAAGAAGATATCCAGAGCATGGAAAATACTTTTGAAGTTATAGGACACTTAGCAAATAAT
GCCAAAGAGAAATTAACAGAGAAACAAACACTTGCATTTCAACTTCGTAAGGAGACTGAGGAGCAGAAGC
CGAAATTGCAGCGAATAACTAAGCAGTGTGGAAGACTCAGAAGAGAAATCCGCATTTTGAAACAAACAGA
TAATGAAACTCTAGAAGAACAGGACATTCAGCTCCGTGAGATCATACAGTTTCACAAGGACATTGACCAA
ATGTTAGTTAATGCCATGGAAAATGCAGAAATTCATGCCATCTTTAAAACATATTTTGAGCAGAACGGGT
TAGAACTACCTACAGCAAGAGGCCCGAGCTCGAGATCTTCTTCCCAGTCTTCCTCCCTTTCATCATTCAG
GTCGCTCGAGGATGTAACTCTCCAGTCTCCCCCCACAGCTAAAGTGATACAGCTCAGATTCCCAGAGCCT
CCTCCAGCAACAAATGACAGTTCTAGGTCAGCTAGTAGTGGCAGTAATTCCAACATTCCTAAAGAAAAAA
AGCTCAGCAAATGA

Translation (937 aa):
MCSEFLSELHWEDGFAIPVANQENKILEDQLAKLREEKSNLQDQLHDYEERINSMTSHLKNVNQEFLFTQ
SLYKARESEIESEEHFKAIAERELGRVKNETQLLEKEMAIIRERKSQMENNIFKTTQKLDDLKCQMNWDQ
QALEAWLEESAHKDSDSLTLQKYSQQDDNKIRALTLQLEKLTMEYNEKRKLLDSELTETLSAQLELDKAA
QDFRKIHLERQELIQQWENTIEQMQRRDQEIDNCALALSRIKQEAREKEGVVKEKIKFLENEVENNIEYE
RKISVAERKVSKCRMDYQRHEGNRSQLKDELDTLKTTLNRTSSDLQALRKNISKVKKDIFDETLRLQKLK
HHNEVVKHKLKMITEKTLSIEEKATNMEDMLKEEEKGLKEVEVQLGIVKDVLFKKVQELQNEIAKEKALV
SEIEGTRSSLKHLNKQLHKLDFETLKQQEIMYSQDFYIQQVERRMSRLKGEINSEEKQALEAKILELKKT
MDEKKSTLSLLESQIKKLHNDLYFIKKSNGKNNDEKESLMNKISELNLFIDRSEKELSKAKAVKEDMMIE
DNLLKLQVKRARELLYSKAEEVLSLEKRKQQLGKDMEERAEEIKVHKAMLTSQIRCVEQQRKTMSSEFHE
RLSKIDKLKNRYEILTVVMLPPEGEEEKTQSYYVIKAAQEKEELQREGDSLDAKINKAEKEIYALQNTLQ
VLNSCNSNYKQSFKKVTPSSDEYALKIQLEEQKRTADERYRCKQRQIRELQEDIQSMENTFEVIGHLANN
AKEKLTEKQTLAFQLRKETEEQKPKLQRITKQCGRLRREIRILKQTDNETLEEQDIQLREIIQFHKDIDQ
MLVNAMENAEIHAIFKTYFEQNGLELPTARGPSSRSSSQSSSLSSFRSLEDVTLQSPPTAKVIQLRFPEP
PPATNDSSRSASSGSNSNIPKEKKLSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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