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Report for CCDS17310.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17310.1 Public Mus musculus 3 Acad9 23 108 98 CCDS HistoryNCBI Gene:229211Re-query CCDS DB by CCDS ID:17310.1Re-query CCDS DB by GeneID:229211See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17310.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000011492.14 ENSMUSP00000011492.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000011492.14Link to Ensembl Protein Viewer:ENSMUSP00000011492.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000011492Re-query CCDS DB by Protein ID:ENSMUSP00000011492
Original member Current member NCBI NM_172678.4 NP_766266.3 Accepted alive Link to Nucleotide Sequence:NM_172678.4Link to Protein Sequence:NP_766266.3Re-query CCDS DB by Nucleotide ID:NM_172678Re-query CCDS DB by Protein ID:NP_766266Link to BLAST:NP_766266.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766266.3 625 Q8JZN5 625 100% 0 0

Chromosomal Locations for CCDS 17310.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 36066109 36066270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36069710 36069803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36073507 36073608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36074350 36074456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36075243 36075343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36075976 36076054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36076722 36076896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36078438 36078511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36080221 36080296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36081811 36081881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36082109 36082228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36085414 36085542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36087720 36087799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36088488 36088614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36088815 36088892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36089332 36089460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36090082 36090154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36090831 36090931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1878 nt):
ATGTCTGGCTGTGTGCTGCTCTCGCGTGGGGCGACTGCGGCGGCGGCTGCGGCGCGAGCTTCCCGGGTGC
TGAGGGAATTCACGGCGAGGCGCCGCCCGCTGCACACCAGCCTGCAGAGCTGCTCGTTCGCCAAGGAGCT
CTTCCTGGGCAACATCGAGCAGAAAGGAGTTTTCCCATTTCCAGAGGTCAGTCAACATGAACTTAGTGAA
ATCAATCAGTTCGTGGGACCGCTGGAAAAATTCTTCACTGAAGAAGTGGACTCTCGAAAAATTGACCAGG
AGGGAAAAATCCCAGTTGACACCTTAGAGAAGTTGAAGAGCCTGGGACTTTTTGGCATACAGGTCCCAGA
AGAATATGGTGGCCTGGGCCTCTCCAACACGATGTATGCTCGGCTCGGGGAGATCATCAGCCTGGATGCC
TCTATCACGGTGACCCTGGCAGCACACCAGGCTATCGGCCTCAAGGGGATTATCTTGGTCGGCAATGAGG
AACAGAAGGCCAAGTATCTGCCCAAACTGTCGTCTGGGGAACACATCGCAGCCTTCTGCCTAACAGAGCC
AGCCAGTGGGAGTGATGCTGCGTCCATCCAGACCAGAGCTACGTTAAGTGAAGATAAGAAGTACTTCATA
CTCAATGGCTCCAAGGTTTGGATCACCAATGGAGGACTGGCCAATATTTTTACTGTGTTTGCAAAAACCG
AGGTGGTCGATTCTGATGGTTCGAAAACAGACAAAATGACCGCATTCATAGTAGAAAGAGACTTCGGCGG
AATCACTAATGGGAAACCTGAAGATAAATTAGGCATTCGAGGCTCCAACACATGTGAGGTCCATTTTGAA
AATACCAGAGTGCCTGTGGAAAATGTCCTTGGAGAAGTTGGAGGGGGCTTTAAGGTAGCCATGAACATCC
TGAACAGTGGGCGATTCAGCATGGGCAGTGCTGTGGCCGGGATGCTGAAGAAGCTGATCGAACTGACTGC
TGAGTATGCCTGTACGAGGAAACAGTTCAACAGGAATCTCAGTGAATTTGGGTTGATCCAGGAAAAGTTT
GCGCTCATGGCTCAGAAGGCATACGTAATGGAGAGTATGGCTTACCTCACTTCAGGGATGCTAGACCAAC
CAGGATTTCCCGACTGCTCTATCGAGGCAGCCATGGTGAAGGTGTTTAGCTCTGAGGCTGCCTGGCAGTG
TGTGAGCGAGGCTCTGCAGATCCTTGGGGGCTCAGGCTACATGAAGGACTACCCCTATGAGCGCATGCTG
CGTGATGCCCGCATTCTCCTAATCTTTGAGGGAACCAATGAGATTCTTCGGTTGTTCATTGCCCTGACAG
GCCTGCAGCATGCTGGACGCATCCTGACCTCGAGGATCAAAGAGCTTAAAAGTGGCAATGTGACCACAGT
CATGGAGACGATTGGTCGGAAACTTCGGGATTCTCTGGGCCGAACTGTGGACCTGGGGCTAACAGGCGAT
CTTGGTGTTGTCCACCCCAGCCTTGGCGACAGTGCCAACAAGCTTGAGGAAAATGTCCATTACTTTGGCC
GGACTGTTGAGACCCTGTTACTCCGTTTTGGAAAGAACATTGTAGAGGAACAGCTGGTGTTAAAGCGGGT
AGCCAACATCCTCATCAACTTGTATGGCATGACTGCTGTGCTGTCGAGAGCCAGCCGCTCCATCAGAATT
GGGCTCAGGAATCATGATCACGAGGTTCTGTTGGCCAACATGTTCTGTGTGGAAGCTTATTTCCAGAATC
TCTTCAGCCTGTCTCAGCTGGACAAGAACGCTCCAGAAAACCTGGATGAGCAGATTAAGAAAGTGTCTCG
GCAGATCCTTGAGAAGCGAGCCTATATCTGTGCCCACCCGCTGGACAGAGCATCCTGA

Translation (625 aa):
MSGCVLLSRGATAAAAAARASRVLREFTARRRPLHTSLQSCSFAKELFLGNIEQKGVFPFPEVSQHELSE
INQFVGPLEKFFTEEVDSRKIDQEGKIPVDTLEKLKSLGLFGIQVPEEYGGLGLSNTMYARLGEIISLDA
SITVTLAAHQAIGLKGIILVGNEEQKAKYLPKLSSGEHIAAFCLTEPASGSDAASIQTRATLSEDKKYFI
LNGSKVWITNGGLANIFTVFAKTEVVDSDGSKTDKMTAFIVERDFGGITNGKPEDKLGIRGSNTCEVHFE
NTRVPVENVLGEVGGGFKVAMNILNSGRFSMGSAVAGMLKKLIELTAEYACTRKQFNRNLSEFGLIQEKF
ALMAQKAYVMESMAYLTSGMLDQPGFPDCSIEAAMVKVFSSEAAWQCVSEALQILGGSGYMKDYPYERML
RDARILLIFEGTNEILRLFIALTGLQHAGRILTSRIKELKSGNVTTVMETIGRKLRDSLGRTVDLGLTGD
LGVVHPSLGDSANKLEENVHYFGRTVETLLLRFGKNIVEEQLVLKRVANILINLYGMTAVLSRASRSIRI
GLRNHDHEVLLANMFCVEAYFQNLFSLSQLDKNAPENLDEQIKKVSRQILEKRAYICAHPLDRAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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