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Report for CCDS17472.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17472.1 Public Mus musculus 3 Bglap3 23 108 98 CCDS HistoryNCBI Gene:12095Re-query CCDS DB by CCDS ID:17472.1Re-query CCDS DB by GeneID:12095See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17472.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075523.10 ENSMUSP00000074965.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075523.10Link to Ensembl Protein Viewer:ENSMUSP00000074965.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000075523Re-query CCDS DB by Protein ID:ENSMUSP00000074965
Original member Current member EBI ENSMUST00000107542.1 ENSMUSP00000103166.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107542.1Link to Ensembl Protein Viewer:ENSMUSP00000103166.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107542Re-query CCDS DB by Protein ID:ENSMUSP00000103166
Original member Current member EBI ENSMUST00000107543.7 ENSMUSP00000103167.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107543.7Link to Ensembl Protein Viewer:ENSMUSP00000103167.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107543Re-query CCDS DB by Protein ID:ENSMUSP00000103167
Original member Current member NCBI NM_001305448.1 NP_001292377.1 Accepted alive Link to Nucleotide Sequence:NM_001305448.1Link to Protein Sequence:NP_001292377.1Re-query CCDS DB by Nucleotide ID:NM_001305448Re-query CCDS DB by Protein ID:NP_001292377Link to BLAST:NP_001292377.1
Original member Current member NCBI NM_001305449.1 NP_001292378.1 Accepted alive Link to Nucleotide Sequence:NM_001305449.1Link to Protein Sequence:NP_001292378.1Re-query CCDS DB by Nucleotide ID:NM_001305449Re-query CCDS DB by Protein ID:NP_001292378Link to BLAST:NP_001292378.1
Original member Current member NCBI NM_001305450.1 NP_001292379.1 Accepted alive Link to Nucleotide Sequence:NM_001305450.1Link to Protein Sequence:NP_001292379.1Re-query CCDS DB by Nucleotide ID:NM_001305450Re-query CCDS DB by Protein ID:NP_001292379Link to BLAST:NP_001292379.1
Original member Current member NCBI NM_031368.5 NP_112736.3 Accepted alive Link to Nucleotide Sequence:NM_031368.5Link to Protein Sequence:NP_112736.3Re-query CCDS DB by Nucleotide ID:NM_031368Re-query CCDS DB by Protein ID:NP_112736Link to BLAST:NP_112736.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001292377.1 95 P54615 95 100% 0 0
NP_001292378.1 95 P54615 95 100% 0 0
NP_001292379.1 95 P54615 95 100% 0 0
NP_112736.3 95 P54615 95 100% 0 0

Chromosomal Locations for CCDS 17472.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 88368756 88368888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88369095 88369152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88369296 88369328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88369473 88369536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (288 nt):
ATGAGGACCCTCTCTCTGCTCACTCTGCTGGCCCTGGCTGCGCTCTGTCTCTCTGACCTCACAGATGCCA
CGCCCACCGGCCCTGAGTCTGACAAAGCCTTCATGTCCAAGCAGGAGGGCAATAAGGTAGTGAACAGACT
CCGGCGCTACCTTGGAGCTTCAGTCCCCAGCCCAGATCCCCTGGAGCCCACCCGGGAGCTATGTGAGCTT
GACCCTGCTTGTGACGAGCTATCAAACCAGTATGGCTTAAAGACCGCCTACAGACGCATCTACGGTATCA
CTATTTAG

Translation (95 aa):
MRTLSLLTLLALAALCLSDLTDATPTGPESDKAFMSKQEGNKVVNRLRRYLGASVPSPDPLEPTRELCEL
DPACDELSNQYGLKTAYRRIYGITI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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