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Report for CCDS17501.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17501.1 Public Mus musculus 3 Efna1 23 108 98 CCDS HistoryNCBI Gene:13636Re-query CCDS DB by CCDS ID:17501.1Re-query CCDS DB by GeneID:13636See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17501.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029566.8 ENSMUSP00000029566.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029566.8Link to Ensembl Protein Viewer:ENSMUSP00000029566.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000029566Re-query CCDS DB by Protein ID:ENSMUSP00000029566
Original member Current member NCBI NM_010107.4 NP_034237.3 Accepted alive Link to Nucleotide Sequence:NM_010107.4Link to Protein Sequence:NP_034237.3Re-query CCDS DB by Nucleotide ID:NM_010107Re-query CCDS DB by Protein ID:NP_034237Link to BLAST:NP_034237.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034237.3 205 P52793 205 100% 0 0

Chromosomal Locations for CCDS 17501.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 89272492 89272604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89272772 89272822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89272957 89273022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89276130 89276425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89279451 89279542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGGAGTTCCTTTGGGCCCCTCTCTTGGGTCTGTGCTGCAGTCTGGCCGCTGCTGACCGCCACATCGTCT
TCTGGAACAGTTCAAATCCCAAGTTCCGTGAGGAGGACTACACGGTGCACGTGCAGCTGAATGACTACCT
AGACATCATCTGCCCACATTACGAGGACGACTCTGTGGCAGATGCAGCCATGGAGCGATACACACTGTAC
ATGGTGGAACACCAGGAGTATGTGGCATGCCAACCCCAGTCCAAGGACCAGGTCCGTTGGAATTGCAACC
GGCCCAGTGCCAAGCATGGCCCGGAGAAGCTGTCTGAGAAATTCCAGCGCTTCACGCCTTTTATCTTGGG
CAAGGAGTTCAAGGAAGGACACAGCTACTACTACATCTCCAAACCTATCTACCATCAGGAATCCCAGTGC
TTGAAGCTGAAGGTGACTGTCAATGGCAAAATCACTCATAATCCCCAGGCCCATGTCAACCCACAGGAGA
AGAGACTCCAAGCAGATGACCCGGAAGTACAGGTTTTGCACAGCATTGGTTACAGTGCCGCCCCCCGCCT
CTTCCCACTGGTCTGGGCAGTATTGCTCCTACCACTGCTGCTGCTGCAATCTCAGTGA

Translation (205 aa):
MEFLWAPLLGLCCSLAAADRHIVFWNSSNPKFREEDYTVHVQLNDYLDIICPHYEDDSVADAAMERYTLY
MVEHQEYVACQPQSKDQVRWNCNRPSAKHGPEKLSEKFQRFTPFILGKEFKEGHSYYYISKPIYHQESQC
LKLKVTVNGKITHNPQAHVNPQEKRLQADDPEVQVLHSIGYSAAPRLFPLVWAVLLLPLLLLQSQ


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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