NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17517.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17517.1 Public Mus musculus 3 Ube2q1 23 108 98 CCDS HistoryNCBI Gene:70093Re-query CCDS DB by CCDS ID:17517.1Re-query CCDS DB by GeneID:70093See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17517.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038356.12 ENSMUSP00000037939.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038356.12Link to Ensembl Protein Viewer:ENSMUSP00000037939.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000038356Re-query CCDS DB by Protein ID:ENSMUSP00000037939
Original member Current member NCBI NM_027315.4 NP_081591.3 Accepted alive Link to Nucleotide Sequence:NM_027315.4Link to Protein Sequence:NP_081591.3Re-query CCDS DB by Nucleotide ID:NM_027315Re-query CCDS DB by Protein ID:NP_081591Link to BLAST:NP_081591.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081591.3 422 Q7TSS2-1 422 100% 0 0

Chromosomal Locations for CCDS 17517.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 89773712 89774038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89776077 89776181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89776512 89776616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89777231 89777281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89779429 89779569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89779755 89779839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89780437 89780497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89780687 89780777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89780889 89780947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89781047 89781095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89781368 89781463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89781771 89781837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89782257 89782288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1269 nt):
ATGCAGCAGCCGCAGCCGCAGGGGCAGCAGCAGCCGGGGCCGGGGCAGCAACTGGGGGTCCAGGGGGCGG
CGCCGGGGGCCGGGGGCGGCCCGGGAGGGGGCCCGGGGCCAGGGCCCTGCCTGAGGCGGGAGCTGAAGCT
GCTCGAGTCCATCTTCCACCGCGGCCACGAGCGCTTCCGCATTGCCAGCGCCTGCCTGGACGAGCTGAGC
TGCGAGTTCCTGCTGGCCGGAGCCGGAGGGGCCGGGGCCGGGGCTGCGCCCGGACCCCATCTCCCCTCCC
GGGGATCGGTGCCGGGGGACCCCGTCCGCATCCACTGCAACATCACGGAATCATACCCTGCTGTGCCCCC
CATCTGGTCGGTGGAGTCCGATGACCCTAACTTGGCTGCTGTCTTGGAGAGGCTGGTGGACATAAAGAAA
GGGAATACTTTGCTCTTGCAGCATCTGAAGAGGATCATCTCTGACCTGTGTAAACTCTACAACCTCCCTC
AGCATCCTGATGTGGAAATGCTGGATCAGCCCTTGCCAGCAGAGCAGTGCACGCAGGAAGAAGTGTCTTC
AGAAGATGAAGATGAAGAGATGCCTGAGGATACAGAAGACCTAGATCACTATGAAATGAAAGAGGAAGAG
CCAGCCGAGGGCAAGAAGTCTGAAGATGATGGCATCGGAAAAGAGAACCTGGCCATCCTAGAGAAAATTA
AAAAGAACCAGAGGCAAGATTACTTAAATGGTGCAGTGTCTGGCTCGGTGCAGGCCACTGACCGGCTGAT
GAAGGAGCTCAGGGATATATACCGATCACAGAGTTTCAAAGGCGGAAACTATGCAGTCGAACTCGTGAAT
GACAGTCTCTATGACTGGAATGTCAAACTCCTCAAAGTTGACCAGGATAGCGCTTTGCACAATGATCTTC
AGATCCTGAAGGAGAAGGAAGGAGCAGACTTCATCCTACTTAACTTCTCCTTTAAAGATAACTTCCCCTT
TGACCCACCGTTCGTCAGGGTTGTGTCTCCAGTCCTCTCTGGAGGGTATGTTCTGGGTGGAGGTGCCATC
TGCATGGAACTTCTCACCAAGCAGGGCTGGAGCAGTGCCTACTCCATAGAGTCCGTGATCATGCAGATCA
GCGCCACGCTGGTGAAGGGGAAAGCACGGGTGCAGTTTGGAGCCAACAAATCTCAGTATAGCCTGACGAG
AGCACAGCAGTCCTACAAGTCCTTGGTGCAGATCCATGAAAAAAACGGCTGGTACACACCCCCAAAGGAA
GATGGCTAG

Translation (422 aa):
MQQPQPQGQQQPGPGQQLGVQGAAPGAGGGPGGGPGPGPCLRRELKLLESIFHRGHERFRIASACLDELS
CEFLLAGAGGAGAGAAPGPHLPSRGSVPGDPVRIHCNITESYPAVPPIWSVESDDPNLAAVLERLVDIKK
GNTLLLQHLKRIISDLCKLYNLPQHPDVEMLDQPLPAEQCTQEEVSSEDEDEEMPEDTEDLDHYEMKEEE
PAEGKKSEDDGIGKENLAILEKIKKNQRQDYLNGAVSGSVQATDRLMKELRDIYRSQSFKGGNYAVELVN
DSLYDWNVKLLKVDQDSALHNDLQILKEKEGADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAI
CMELLTKQGWSSAYSIESVIMQISATLVKGKARVQFGANKSQYSLTRAQQSYKSLVQIHEKNGWYTPPKE
DG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH