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Report for CCDS17522.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17522.1 Public Mus musculus 3 Rab13 23 108 98 CCDS HistoryNCBI Gene:68328Re-query CCDS DB by CCDS ID:17522.1Re-query CCDS DB by GeneID:68328See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17522.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065418.6 ENSMUSP00000070588.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065418.6Link to Ensembl Protein Viewer:ENSMUSP00000070588.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000065418Re-query CCDS DB by Protein ID:ENSMUSP00000070588
Original member Current member NCBI NM_026677.4 NP_080953.1 Accepted alive Link to Nucleotide Sequence:NM_026677.4Link to Protein Sequence:NP_080953.1Re-query CCDS DB by Nucleotide ID:NM_026677Re-query CCDS DB by Protein ID:NP_080953Link to BLAST:NP_080953.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080953.1 202 Q9DD03 202 100% 0 0

Chromosomal Locations for CCDS 17522.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 90220899 90221022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90222237 90222297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90223527 90223587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90223790 90223867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90224494 90224583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90224702 90224767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90224848 90224901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90225509 90225583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (609 nt):
ATGGCCAAAGCCTACGACCACCTCTTCAAGTTGCTGCTCATCGGGGACTCGGGGGTGGGCAAGACTTGTC
TGATCATTCGCTTTGCAGAGGACAACTTCAACAGCACTTACATCTCTACCATCGGAATTGATTTCAAGAT
CCGAACCGTGGACATAGAGGGGAAGAGGATCAAACTGCAAGTGTGGGACACGGCTGGCCAAGAACGATTC
AAGACAATAACTACCGCCTATTACCGTGGAGCCATGGGCATTATCCTCGTATATGACATCACAGATGAGA
AATCCTTCGAGAATATTCAGAACTGGATGAAAAGCATCAAAGAGAATGCCTCTGCGGGAGTGGAGCGCCT
CCTGCTGGGAAACAAGTGTGACATGGAGGCCAAGCGGCAGGTGCAGAGAGAGCAGGCGGAGAAGTTGGCT
CGAGAGCACAGAATCCGATTTTTTGAGACGAGTGCCAAATCCAGTGTGAATGTGGATGAGGCTTTCAGTT
CCCTGGCCCGTGACATCTTGCTCAAGACAGGAGGCCGGAGATCGGGAACCAACAGTAAGCCCTCAAGCAC
TGGCCTGAAAACATCTGACAAGAAGAAGAACAAGTGCTTGTTAGGCTGA

Translation (202 aa):
MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERF
KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRQVQREQAEKLA
REHRIRFFETSAKSSVNVDEAFSSLARDILLKTGGRRSGTNSKPSSTGLKTSDKKKNKCLLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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