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Report for CCDS17611.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17611.1 Public Mus musculus 3 Mindy1 23 108 98 CCDS HistoryNCBI Gene:75007Re-query CCDS DB by CCDS ID:17611.1Re-query CCDS DB by GeneID:75007See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17611.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039537.13 ENSMUSP00000043910.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039537.13Link to Ensembl Protein Viewer:ENSMUSP00000043910.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000039537Re-query CCDS DB by Protein ID:ENSMUSP00000043910
Original member Current member EBI ENSMUST00000168223.1 ENSMUSP00000127839.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168223.1Link to Ensembl Protein Viewer:ENSMUSP00000127839.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168223Re-query CCDS DB by Protein ID:ENSMUSP00000127839
Original member Current member NCBI NM_133858.4 NP_598619.2 Accepted alive Link to Nucleotide Sequence:NM_133858.4Link to Protein Sequence:NP_598619.2Re-query CCDS DB by Nucleotide ID:NM_133858Re-query CCDS DB by Protein ID:NP_598619Link to BLAST:NP_598619.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598619.2 459 Q76LS9-2 459 100% 0 0

Chromosomal Locations for CCDS 17611.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 95287948 95288400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95291022 95291079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95291480 95291544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95292125 95292283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95292625 95292727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95293625 95293767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95294795 95294986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95295300 95295425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95295651 95295731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1380 nt):
ATGGAACAACCTCAGACTGAGAACCCAGCCCCTAGTAAGGCCACTAGTGCAGAAACTGTTGAATCTGAAA
ACCATGAGGCCCTGTCTGGACCAGAGAAGCATCCTCAGGACAAGGATGGTGCAGATGCTGATGGAGCAGC
TGGAGAACAGGAGCCAGGAGACCAAACTTTGCCACCAGCCCAGGATGGTGAAAATCTTGAGTGTCCTCCT
CCTGAAGCTAGCTCAAGTCCTCCTGGGCCAGCTTGTGGGACGTCACCTAAGGTAGAGACAGCAGAGGTGT
GTTCCAGGCCACAGGAACTTCCCCAGTCCCCCAGGATCCAACAGCCTGAGCTAGATTTCTACTGTGTCAA
GTGGATCCCCTGGAAGGGAGAACGGACCCCGATCATCACCCAGAGCACCAATGGTCCGTGTCCTCTTCTA
GCCATCATGAACATCCTTTTTCTTCAGTGGAAGGTGAAGCTGCCCCCTCAGAAGGAAGTGATCACATCAG
ATGAGCTCCTGACACACCTTGGAAACTGCCTTCTGTCCATCAAACCCCAAGAGAAGTCTGAGGGCCTTCA
ACTTAACTTTCAGCAGAATGTGGACGATGCAATGACGGTGCTCCCGAAACTGGCCACAGGTCTGGACGTC
AATGTGCGATTCACGGGCGTCTCCGACTTTGAGTATACGCCGGAATGCAGCATCTTTGACTTGCTGGGAA
TACCTCTATACCATGGCTGGCTGGTGGATCCACAGAGTCCCGAGGCTGTGAGTGCTGTTGGGAAACTGAG
TTACAACCAGCTGGTAGAGAAGATCATCACCTGTAAACACTCTAGTGACTCCAACCTCGTGACAGAAGGC
TTGGTTGCGGAGCAGTTCCTGGAGACCACTGCGGCACAGTTGACCTACCATGGCCTGTGCGAGCTCACAG
CAGCTGCCACGGAAGATGAACTTAGTGTCTTCTTTCGAAACAACCACTTCAGCACGATGACTAAGCACAA
GAGTCACCTGTACCTACTGGTCACTGACCAAGGTTTTCTACAGGAGGAGCAGGTGGTATGGGAGAGCTTG
CATAACGTGGATGGTGACAGCTGCTTTTGTGACTCGGACTTCCACCTAAGTCATTCCCTAGGCAAAAGCC
ATGGAGCAGAAGGTGGGGGTGGCTCTCCAGAGAAGCAGCTGCAAGTGGACCAGCAGCAGCAGCAGCCACA
AGGCACGTTGGGCCTCAGTGACCTGGAACTGGCCCAACAACTTCAACAAGAAGAGTATCAACAACAGCAA
GCAGTTCAACCTGTGCGAACAAGGGCTCCTTCGCCCCAGGGGAGAGGAGCCACATCTGGACGTCCAGCTG
GAGAGCGGCGGCAGAGGTCAAAGACTGAGTCAGACTGTGTTCTGCTCTGA

Translation (459 aa):
MEQPQTENPAPSKATSAETVESENHEALSGPEKHPQDKDGADADGAAGEQEPGDQTLPPAQDGENLECPP
PEASSSPPGPACGTSPKVETAEVCSRPQELPQSPRIQQPELDFYCVKWIPWKGERTPIITQSTNGPCPLL
AIMNILFLQWKVKLPPQKEVITSDELLTHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLPKLATGLDV
NVRFTGVSDFEYTPECSIFDLLGIPLYHGWLVDPQSPEAVSAVGKLSYNQLVEKIITCKHSSDSNLVTEG
LVAEQFLETTAAQLTYHGLCELTAAATEDELSVFFRNNHFSTMTKHKSHLYLLVTDQGFLQEEQVVWESL
HNVDGDSCFCDSDFHLSHSLGKSHGAEGGGGSPEKQLQVDQQQQQPQGTLGLSDLELAQQLQQEEYQQQQ
AVQPVRTRAPSPQGRGATSGRPAGERRQRSKTESDCVLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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