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Report for CCDS17629.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17629.1 Public Mus musculus 3 Otud7b 23 108 98 CCDS HistoryNCBI Gene:229603Re-query CCDS DB by CCDS ID:17629.1Re-query CCDS DB by GeneID:229603See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17629.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035519.11 ENSMUSP00000046413.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035519.11Link to Ensembl Protein Viewer:ENSMUSP00000046413.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000035519Re-query CCDS DB by Protein ID:ENSMUSP00000046413
Original member Current member EBI ENSMUST00000090785.8 ENSMUSP00000088291.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090785.8Link to Ensembl Protein Viewer:ENSMUSP00000088291.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000090785Re-query CCDS DB by Protein ID:ENSMUSP00000088291
Original member Current member EBI ENSMUST00000098849.2 ENSMUSP00000096449.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098849.2Link to Ensembl Protein Viewer:ENSMUSP00000096449.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000098849Re-query CCDS DB by Protein ID:ENSMUSP00000096449
Original member Current member NCBI NM_001025613.1 NP_001020784.1 Accepted alive Link to Nucleotide Sequence:NM_001025613.1Link to Protein Sequence:NP_001020784.1Re-query CCDS DB by Nucleotide ID:NM_001025613Re-query CCDS DB by Protein ID:NP_001020784Link to BLAST:NP_001020784.1
Original member Current member NCBI NM_001025614.1 NP_001020785.1 Accepted alive Link to Nucleotide Sequence:NM_001025614.1Link to Protein Sequence:NP_001020785.1Re-query CCDS DB by Nucleotide ID:NM_001025614Re-query CCDS DB by Protein ID:NP_001020785Link to BLAST:NP_001020785.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020784.1 840 B2RUR8 840 100% 0 0
NP_001020785.1 840 B2RUR8 840 100% 0 0

Chromosomal Locations for CCDS 17629.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 96136540 96136624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96140417 96140605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96141488 96141715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96144241 96144342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96144968 96145095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96150862 96150974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96151338 96151465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96151895 96152044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96152513 96152627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96153408 96153492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 96154769 96155968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2523 nt):
ATGACCCTGGACATGGATGCTGTCCTGTCGGATTTTGTTCGTTCCACAGGTGCAGAGCCAGGGCTGGCTC
GAGATCTTCTAGAAGGAAAGAACTGGGATGTGAGTGCTGCCCTCAGTGATTTTGAACAGTTGCGTCAAGT
CCATGCTGGGAACCTATCCCCACCCTTTAGTGGAGGGAGTACTTGCCCTAAGACCCCTGAAAAAGGGGGT
TCGGATAGAGAGCCCACTCGCCCTTCTCGACCCATCCTTCAGAGACAAGATGACGTCATTCAAGAAAAAC
GCCTGTCTAGGGGCATCTCCCACGCCAGCTCCAGCATTGTTTCCCTGGCCCGCTCCCATGTCTCCTCCAA
TGGTGGGGGTGGGGGGAGCAGTGAGCACCCCCTGGAAATGCCCATCTGTGCCTTCCAGCTTCCAGATCTC
ACTGTGTACAAAGAAGACTTCCGCAGCTTCATAGAGCGAGACCTCATTGAGCAGTCCATGCTGGTTGCCT
TGGAACAGGCAGGGCGTCTGAATTGGTGGGTTAGTATGGACTCCACCTGCCAGAGGCTGCTCCCTTTAGC
AACTACTGGGGATGGGAACTGCCTCCTGCATGCAGCATCTCTTGGGATGTGGGGTTTCCATGATAGAGAC
TTGGTGCTGAGGAAAGCGCTGTATGCACTGATGGAGAAGGGGGTGGAGAAGGAAGCACTGAGAAGGCGCT
GGAGGTGGCAGCAAACACAGCAGAATAAAGAGTCAGGACTGGTGTATACGGAAGATGAGTGGCAGAAGGA
ATGGAATGAATTGATCAAACTTGCTTCAAGTGAACCCAGAATGCATCTGGGTTCCAACGGAGCCAGTGGT
GGTGGAGTGGAGAGCTCCGAGGAGCCGGTATATGAAAGCCTAGAGGAATTCCATGTCTTCGTCCTTGCTC
ATGTGCTCAAGAGGCCCATAGTGGTCGTGGCAGACACCATGCTGAGGGACTCTGGAGGGGAAGCATTTGC
CCCTATCCCATTTGGAGGGATCTATCTGCCATTGGAGGTTCCAGCCAGCCAGTGTCACCGATCCCCTCTG
GTGCTCGCCTATGATCAGGCCCACTTCTCTGCGCTTGTGTCGATGGAGCAGAAGGAGAGCGCCAAAGAAC
AAGCTGTGATCCCACTCACAGATTCAGAGCACAAGCTGCTGCCCCTGCACTTTGCTGTGGACCCAGGAAA
GGGCTGGGAGTGGGGCAAAGATGACAATGACAATGTCCGATTGGCCAGTATAATTCTGTCTCTGGAGGTG
AAGTTACATCTGCTGCATAGCTATATGAATGTGAAGTGGATCCCACTGTCTTCTGATTCACAAGCTCCCC
TAGCTCAGCCTGAGTCCCCCACAGCCTCAGCTGGAGATGAACCCAGGTCCACTCCTGAGTCTGGGGAGTC
AGACAAGGAGTCGGTTGGCAGCAGTTCTCTCGGCAACGAGGGCAGCAGGCGGAAGGAGAAGTCAAAGCGA
GACCGGGAGAAGGACAAGAAGAGAGCAGATTCCGTGGCTAACAAACTGGGCAGCTTTGGCAAAACCTTGG
GCAGCAAGCTTAAGAAGAACATGGGGGGCCTGATGCACAGCAAGGGCCCCAAGCCTGGAGGGCTGGGGAG
TGGGTCTGGAATAAGCAGTGGTACGGAGACATTAGAAAAGAAGAAGAAGAACAACACATTGAAGAGCTGG
AAGGGTGGCAAGGAAGAGGCTGCTGGGGATGGGCCTGTGTCTGAGAAGCCCCCGTCTGAGTCTGTTGGCA
ATGGCGGGAGCAAGTATAGCCAGGAGGTGATGCAAAGCCTGAGCACTATGAGGATCGCAATGCAAGGGGA
GGGCAAGTACATTTTTGTTGGAACCCTGAAGATGGGCCACCGGCACCAGTATCAGGAGGAGATGATCCAG
CGTTACCTTGCAGATGCTGAGGAAAGATTCCTGGCAGAGCAGAAGCAGAAGGAGGTTGAGAGGAAGATCA
TGAATGGAGGGTTAGTTAGTGGGCCTCCTCCAGCCAAAAAGCCAGAGCCGGACGGTGGGGAGGACCAGCC
CAGTGACTCCCCCGCAGAGCCCAAGGCGATGGCCTTCTCTACTGCTTACCCTGGGGGCTTTACTATCCCT
CGGCCTTCTGGGGGTGGAGTCCACTGCCAGGAACCCCGGAGGCAATTGGCAGGGGGGCCATGTGTAGGGG
GCTTACCATCATATGCCACCTTTCCCAGACAGTATCCTGGGCGACCGTACCCCCACCAGGACAACATCCC
AGCTCTGGAGCCAGGCAAAGATGGAGTTCACAGGGGTGCCTTGTTACCACCCCAGTTCCGTGTGGCTGAT
TCCTATAGCAATGGCTACAGAGAGCCCCCAGAGCCAGATGGATGGGCTGGAGCTCCACGGGGACTTCCCC
CAACCCAGACCAAATGCAAACAACCGAACTGCAGCTTCTATGGACACCCTGAGACAAACAACTTGTGCTC
TTGCTGTTACAGGGAAGAACTGAGGCGGAGGGAGCGGGAACCTGGTGGGGAACTGCTGGCACACAGGTTC
TGA

Translation (840 aa):
MTLDMDAVLSDFVRSTGAEPGLARDLLEGKNWDVSAALSDFEQLRQVHAGNLSPPFSGGSTCPKTPEKGG
SDREPTRPSRPILQRQDDVIQEKRLSRGISHASSSIVSLARSHVSSNGGGGGSSEHPLEMPICAFQLPDL
TVYKEDFRSFIERDLIEQSMLVALEQAGRLNWWVSMDSTCQRLLPLATTGDGNCLLHAASLGMWGFHDRD
LVLRKALYALMEKGVEKEALRRRWRWQQTQQNKESGLVYTEDEWQKEWNELIKLASSEPRMHLGSNGASG
GGVESSEEPVYESLEEFHVFVLAHVLKRPIVVVADTMLRDSGGEAFAPIPFGGIYLPLEVPASQCHRSPL
VLAYDQAHFSALVSMEQKESAKEQAVIPLTDSEHKLLPLHFAVDPGKGWEWGKDDNDNVRLASIILSLEV
KLHLLHSYMNVKWIPLSSDSQAPLAQPESPTASAGDEPRSTPESGESDKESVGSSSLGNEGSRRKEKSKR
DREKDKKRADSVANKLGSFGKTLGSKLKKNMGGLMHSKGPKPGGLGSGSGISSGTETLEKKKKNNTLKSW
KGGKEEAAGDGPVSEKPPSESVGNGGSKYSQEVMQSLSTMRIAMQGEGKYIFVGTLKMGHRHQYQEEMIQ
RYLADAEERFLAEQKQKEVERKIMNGGLVSGPPPAKKPEPDGGEDQPSDSPAEPKAMAFSTAYPGGFTIP
RPSGGGVHCQEPRRQLAGGPCVGGLPSYATFPRQYPGRPYPHQDNIPALEPGKDGVHRGALLPPQFRVAD
SYSNGYREPPEPDGWAGAPRGLPPTQTKCKQPNCSFYGHPETNNLCSCCYREELRRREREPGGELLAHRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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