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Report for CCDS17726.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17726.1 Public Mus musculus 3 Lrif1 23 108 98 CCDS HistoryNCBI Gene:321000Re-query CCDS DB by CCDS ID:17726.1Re-query CCDS DB by GeneID:321000See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17726.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098750.4 ENSMUSP00000096346.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098750.4Link to Ensembl Protein Viewer:ENSMUSP00000096346.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000098750Re-query CCDS DB by Protein ID:ENSMUSP00000096346
Original member Current member NCBI NM_001039488.1 NP_001034577.1 Accepted alive Link to Nucleotide Sequence:NM_001039488.1Link to Protein Sequence:NP_001034577.1Re-query CCDS DB by Nucleotide ID:NM_001039488Re-query CCDS DB by Protein ID:NP_001034577Link to BLAST:NP_001034577.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034577.1 755 Q8CDD9-1 755 100% 0 0

Chromosomal Locations for CCDS 17726.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 106722045 106722106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106731663 106733142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106734358 106734639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106735405 106735848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2268 nt):
ATGTCTAATAGTCTCCAGAGCGTCATTCTGAAAACCGCAGAGGAAAAGTCAGGCTCGCGCTGTATTTCAG
GGTGCATGTACCAAGTAGTTCCTACGATTGGCAGCGATGGAAAAAAACTTCTGCAATTACTTCCAATTTC
TAAATCTTCTGGAAATCTTATCCCAGTAGTTCAGTCTCCAGTCATGTCTCATGGTTTGAAAGCGAATACT
GAAAAACCAGTTCAAGTTACTTTTCAAACTCAGATTTCCAGCTCTTCCACAAGTGCATCTGTTCAATTGC
CTGTTTTTCAGCCAGCCAATACTACAAAATGTTTTTTTACAGGAGCAATAGATACAACAGGAAAAGATAG
AGTTACTTCTGTGAGGACTGGAAATTTTACACCACCAGTTTCTAACATTCAGAATCATGGTGTGAAAATT
CATAAACTCACCAGGCAAACATTTACTATTCCTCCCTCAACACAAAATGATTCATCTCATTTTATATTCA
ATACCCCAAGTCTCCTACCAAATGTGAATTCTTCAATTTTGCCTTCTGGGAATCATTTAAAGATTCCAGC
CCATGCTGAAGTGAAATCTGTACTTGCATCATCCTTGCCTCCTTTGGTTCAGCAAAAGATACTTGGAACT
GCAACCACAAGTACCTCAGGAACAGTTGAGGCCTCCCAAATACCAACAGTTGTTTATGTACATCCTGTAA
ATTCAGTGAAATTTGTTGTTACCAAGAAAACTCAGACTATTTACCCCAAACCAGTGACATTCAATACCTT
GCAAATTCCACCAAATGTTGCTACAGAAACACAATTAAAAGGTGGTCAGCATCCTCAAGCTGCTCCAGTG
AACTCGATTTTTCAGGAGTATCTACAGCCTGGAATCCCATGTATTATTCCTGTTAAGTCTTCAAATAATG
TGGCTACAAAGGTTTTAAACACTTTTGTAGGTAGGAAAAATCTGGGAGATAATACAATAGATACACCTCT
GTTGAATACCAACAGTTCTGGCAGGACACACTCCGTAAGTGAACCTATTAAAGATAATGCTTTGATAATG
TTTAATGGGAAAGTCTGGTTGAATGAAAAGGGGACATGCGGTCTGCCATCAAAAATTGACCAGCAGAATT
CTGTTTCTTCTGATATTCCACTAAAAGATTCATCACAGCTAGTAAGTTCAAGTATAGTCACAGAAATATC
CAGAGAGATTTTAAATAGTGTTTTGGTTAAAAGTAAATCTTTTCAGTTGAAGACAAAATCACTTTCAAAT
TCCCAGCTTGCTTCCATGGCCAATCTAAGAGCAGAGAAGAATGAAAAAGTGGAGAGACCATCTTTTTCTG
TCACAAATCCACATACTATGAACCAGTCCACTCACTGCCTTAAACAGAGTAAGACTGTATTTATAAACCC
AGTTTTTCCAGATGGATTTAGGACAGGACAGAATGCCCCCAGAAAAGGAAATCTCGTCCAGAACATAGAG
AAAATATGTTCCTCTGTTGATGCAGCAACTGTTACTTCTCAACAGTGTGTTTTCAGAGACCAAGAATCAC
AGACGCAGTATGAGATGGCATCAATAGTAAAAAAGGAAATTCAAGAAAAAGGAAATAACAAGAAATATTC
TCAAGGAAGCCATACTAATATTAAGGCATCATGTCTGAAGAATGATGCTGAATTTAAAAAGCTATTTGGT
CTCACTAAAGATTTGAGAGTATGTCTTACTCGAATTCCTGACCATCTGAGCTCTGGAAAAAGTTTTAATT
CCTTTAACAGTTTGATGAAAAGTAGTTCTTACAAAGATGCAAACATTGTGGTGAAGAAAGAAGAAAAAAA
ACAGAGTTTCTCTAAGAAAAGAAAAGCGGAAACCATGAAGATGGGTAACACAAAAAAGATAAAAATTGAG
AATGCTGATGACACGGTCATGAGCATCATGAATGGAACTGATGTTGCTAGTTCCCAACCTCTCAGTAGTA
TTTTACCAACATCAGACATATCACAACATAACATTGTCACAAGCCATAGTACAACCAGGGAAGACAAGAG
AACTGAGGCAGAACACTGTTCTCATGAGAAGCAGGAAAAAGGCACATTAAGTTCAAGCACATCTTTTGAA
CAAAGTACTTTTTTAAATAAAAACTTTATGGAAGATATTTTTCCAGTGACACCACCAGAACTAGAAGAAA
CCATCAGAGATGAAAAAATAAGAAGACTTAAGCAAATTTTAAGAGAAAAAGAAGCAGCTCTTGAAGAATT
GCGTAAGAAGATGTACCAAAAACAATAA

Translation (755 aa):
MSNSLQSVILKTAEEKSGSRCISGCMYQVVPTIGSDGKKLLQLLPISKSSGNLIPVVQSPVMSHGLKANT
EKPVQVTFQTQISSSSTSASVQLPVFQPANTTKCFFTGAIDTTGKDRVTSVRTGNFTPPVSNIQNHGVKI
HKLTRQTFTIPPSTQNDSSHFIFNTPSLLPNVNSSILPSGNHLKIPAHAEVKSVLASSLPPLVQQKILGT
ATTSTSGTVEASQIPTVVYVHPVNSVKFVVTKKTQTIYPKPVTFNTLQIPPNVATETQLKGGQHPQAAPV
NSIFQEYLQPGIPCIIPVKSSNNVATKVLNTFVGRKNLGDNTIDTPLLNTNSSGRTHSVSEPIKDNALIM
FNGKVWLNEKGTCGLPSKIDQQNSVSSDIPLKDSSQLVSSSIVTEISREILNSVLVKSKSFQLKTKSLSN
SQLASMANLRAEKNEKVERPSFSVTNPHTMNQSTHCLKQSKTVFINPVFPDGFRTGQNAPRKGNLVQNIE
KICSSVDAATVTSQQCVFRDQESQTQYEMASIVKKEIQEKGNNKKYSQGSHTNIKASCLKNDAEFKKLFG
LTKDLRVCLTRIPDHLSSGKSFNSFNSLMKSSSYKDANIVVKKEEKKQSFSKKRKAETMKMGNTKKIKIE
NADDTVMSIMNGTDVASSQPLSSILPTSDISQHNIVTSHSTTREDKRTEAEHCSHEKQEKGTLSSSTSFE
QSTFLNKNFMEDIFPVTPPELEETIRDEKIRRLKQILREKEAALEELRKKMYQKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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