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Report for CCDS17753.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17753.1 Public Mus musculus 3 Amigo1 23 108 98 CCDS HistoryNCBI Gene:229715Re-query CCDS DB by CCDS ID:17753.1Re-query CCDS DB by GeneID:229715See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17753.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050909.6 ENSMUSP00000061244.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050909.6Link to Ensembl Protein Viewer:ENSMUSP00000061244.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000050909Re-query CCDS DB by Protein ID:ENSMUSP00000061244
Original member Current member EBI ENSMUST00000106656.1 ENSMUSP00000102267.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106656.1Link to Ensembl Protein Viewer:ENSMUSP00000102267.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106656Re-query CCDS DB by Protein ID:ENSMUSP00000102267
Original member NCBI NM_001004293.2 NP_001004293.1 Updated not alive Link to Nucleotide Sequence:NM_001004293.2Link to Protein Sequence:NP_001004293.1Re-query CCDS DB by Nucleotide ID:NM_001004293Re-query CCDS DB by Protein ID:NP_001004293
Current member NCBI NM_001004293.3 NP_001004293.1 Accepted alive Link to Nucleotide Sequence:NM_001004293.3Link to Protein Sequence:NP_001004293.1Re-query CCDS DB by Nucleotide ID:NM_001004293Re-query CCDS DB by Protein ID:NP_001004293Link to BLAST:NP_001004293.1
Original member NCBI NM_146137.3 NP_666249.2 Updated not alive Link to Nucleotide Sequence:NM_146137.3Link to Protein Sequence:NP_666249.2Re-query CCDS DB by Nucleotide ID:NM_146137Re-query CCDS DB by Protein ID:NP_666249
Current member NCBI NM_146137.4 NP_666249.2 Accepted alive Link to Nucleotide Sequence:NM_146137.4Link to Protein Sequence:NP_666249.2Re-query CCDS DB by Nucleotide ID:NM_146137Re-query CCDS DB by Protein ID:NP_666249Link to BLAST:NP_666249.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004293.1 492 Q80ZD8-1 492 100% 0 0
NP_666249.2 492 Q80ZD8-1 492 100% 0 0

Chromosomal Locations for CCDS 17753.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 108187187 108188665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1479 nt):
ATGCAACCCCAGCGTGACCTGCGAGGCCTCTGGCTCCTGCTGCTCTCCGTGTTCCTGCTTCTCTTTGAGG
TAGCCAGGGCCGGCCGATCTGTGGTTAGTTGTCCCGCCAACTGCCTGTGCGCCAGCAACATCCTCAGCTG
CTCCAAGCAGCAGCTGCCCAATGTGCCCCAATCTTTGCCCAGCTACACAGCACTGCTGGACCTCAGCCAC
AACAACTTGAGCAGGCTGCGGGCCGAGTGGACCCCCACCCGGCTGACCAACCTGCACTCCCTGCTGCTGA
GCCACAACCACCTGAACTTCATCTCCTCCGAGGCCTTCGTCCCCGTACCCAACCTTAGGTACTTGGACCT
CTCCTCCAACCATCTTCACACGCTGGATGAGTTCCTGTTCAGCGACCTGCAGGCGCTGGAAGTGCTGTTG
CTCTACAATAACCACATTGTGGTGGTGGACCGGAATGCCTTTGAGGACATGGCCCAGCTGCAGAAACTCT
ACTTAAGCCAGAATCAGATCTCTCGCTTTCCTGTGGAACTGATCAAGGATGGGAACAAATTACCCAAACT
GATGCTCTTGGATCTGTCCTCCAACAAGCTGAAGAAGTTGCCCCTGACTGACCTGCAGAAATTGCCAGCC
TGGGTCAAGAATGGGCTATACCTGCATAACAACCCCTTGGAGTGCGACTGCAAGCTCTACCAGCTCTTTT
CGCACTGGCAGTACCGGCAGCTGAGCTCTGTGATGGACTTCCAGGAGGACCTGTACTGCATGCACTCCAA
GAAGCTGCACAACATCTTCAGCCTGGATTTCTTCAATTGCAGCGAGTACAAGGAAAGTGCCTGGGAGGCT
CACCTGGGAGACACCTTGACCATCAGGTGTGACACCAAACAGCAAGGCATGACCAAAGTGTGGGTGTCCC
CAAGCAATGAACAGGTGCTAAGTCAGGGGTCCAATGGCTCGGTGAGCGTGAGGAATGGCGACCTTTTTTT
TAAAAAGGTGCAGGTCGAGGATGGGGGTGTGTATACCTGTTACGCCATGGGGGAGACTTTCAACGAGACA
CTGTCTGTGGAGTTGAAAGTGTATAACTTCACCTTGCACGGACACCATGACACCCTCAACACAGCCTACA
CTACCCTGGTGGGCTGTATCCTCAGTGTGGTTCTGGTCCTCATATACTTGTACCTCACCCCTTGCCGCTG
CTGGTGTCGGGGTGTGGAGAAACCTTCCAGCCACCAAGGAGATAGCCTCAGCTCTTCTATGCTCAGTACC
ACACCCAACCACGACCCTATGGCTGGTGGGGACAAAGATGATGGTTTTGACCGGCGGGTGGCCTTCCTGG
AACCTGCTGGACCCGGGCAGGGTCAAAATGGCAAACTCAAGCCAGGCAACACTCTGCCGGTGCCCGAAGC
TACAGGCAAGGGCCAACGGAGGATGTCCGATCCAGAGTCGGTCAGCTCGGTCTTTTCTGATACACCCATT
GTGGTGTGA

Translation (492 aa):
MQPQRDLRGLWLLLLSVFLLLFEVARAGRSVVSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSH
NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL
LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA
WVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYKESAWEA
HLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETFNET
LSVELKVYNFTLHGHHDTLNTAYTTLVGCILSVVLVLIYLYLTPCRCWCRGVEKPSSHQGDSLSSSMLST
TPNHDPMAGGDKDDGFDRRVAFLEPAGPGQGQNGKLKPGNTLPVPEATGKGQRRMSDPESVSSVFSDTPI
VV


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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