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Report for CCDS17773.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17773.1 Public Mus musculus 3 Vav3 23 108 98 CCDS HistoryNCBI Gene:57257Re-query CCDS DB by CCDS ID:17773.1Re-query CCDS DB by GeneID:57257See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17773.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046864.13 ENSMUSP00000036270.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046864.13Link to Ensembl Protein Viewer:ENSMUSP00000036270.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000046864Re-query CCDS DB by Protein ID:ENSMUSP00000036270
Original member Current member NCBI NM_020505.2 NP_065251.2 Accepted alive Link to Nucleotide Sequence:NM_020505.2Link to Protein Sequence:NP_065251.2Re-query CCDS DB by Nucleotide ID:NM_020505Re-query CCDS DB by Protein ID:NP_065251Link to BLAST:NP_065251.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065251.2 847 Q9R0C8-1 847 100% 0 0

Chromosomal Locations for CCDS 17773.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 109341039 109341242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109423991 109424107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109494778 109494836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109496888 109496953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109501378 109501486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109503410 109503502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109506396 109506464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109508784 109508887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109510886 109510985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109515988 109516083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109519433 109519501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109521441 109521527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109525869 109525954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109527414 109527546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109528275 109528384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109562743 109562844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109563104 109563204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109574106 109574131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109578319 109578364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109628031 109628167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109647672 109647737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109651786 109651820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109657242 109657358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109657922 109658009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109664304 109664433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109682806 109682957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 109683568 109683609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2544 nt):
ATGGAGCCGTGGAAGCAGTGCGCTCAGTGGCTCATCCACAGCAAGGTGCTGCCCCCCAACCATCGGGTGA
CCTGGGACTCGGCGCAGGTGTTCGACCTGGCGCAGACCCTTCGCGATGGAGTCCTGCTCTGCCAGCTGCT
CAACAACCTGCGGCCACACTCCATCAATCTGAAGGAGATCAACCTGAGGCCCCAGATGTCCCAGTTTCTC
TGTTTGAAGAACATCCGGACATTCCTGGCCGCCTGCTGCGATACCTTTGGAATGAGGAAAAGTGAACTTT
TTGAGGCATTTGACCTATTTGATGTTCGAGACTTTGGAAAGGTTATAGAAACATTATCTCGGCTATCCCG
AACACCAATAGCATTGGCCACAGGAATCAGGCCGTTCCCCACTGAAGAAAGTATAAATGATGAAGACATC
TACAAAGGCCTTCCCGACTTAATAGATGAAACCCGCGTGGAAGATGAAGAAGACCTCTATGACTGTGTGT
ACGGCGAGGATGAAGGCGGAGAAGTCTATGAAGACTTGATGAAGGCGGAGGAAGCCCAGCAACCTAAATC
ACAAGAAAATGATATACGGAGTTGTTGCCTAGCAGAAATTAGGCAGACAGAAGAAAAATACACAGAAACG
TTGGAGTCAATAGAAAAATATTTCATGGCACCATTGAAAAGATTTCTGACGGCGGCGGAATTTGATTCAG
TATTTATTAACATTCCTGACCTTGTAAAAGTTCATCGGAGCTTAATGCAAGAGATTCATGATTCCATTGT
AAATAAAGATGACCAGAACTTGTATCAAGTTTTTATTAACTACAAGGAAAGATTGGTTATTTATGGGCAG
TACTGCAGTGGAGTGGAGTCAGCCATCTCTAACCTAGACTACATCTCTAAGACAAAAGAAGATGTCAAAC
TGAAATTAGAGGAATGTTCAAAAAGAGCCAATAACGGGAAGTTTACTCTGCGCGATTTGCTGGTCGTTCC
AATGCAGCGCGTGCTGAAGTATCACCTCCTCCTTCAGGAGCTGGTAAAACACACCCATGACCCTATGGAG
AAGGCGAACCTGAAGCTGGCTCTGGATGCAATGAAGGACTTGGCACAATATGTGAATGAAGTAAAAAGAG
ATAATGAGACCCTTCGTGAAATTAAGCAGTTTCAGCTATCTATAGAGAATTTGAACCAGCCAGTTTTGCT
CTTTGGACGACCACAGGGAGACGGTGAAATCCGAATAACCACTCTGGACAAGCATACAAAACAAGAAAGG
CATATCTTCTTATTCGACTTGGCAGTGATTGTCTGTAAAAGGAAAGGCGATAACTACGAGATGAAGGAAA
TAATAGATCTCCAGCAGTACAAGATAGCCAACAACCCTACCACTGACAAAGAGAATAAAAAGTGGTCTTA
TGGCTTCTACCTCATCCATACCCAAGGACAAAATGGGTTAGAATTTTATTGCAAAACAAAAGATTTAAAG
AAAAAATGGCTGGAACAGTTTGAAATGGCTCTATCCAACATAAGGCCAGACTATGCAGACTCCAATTTCC
ATGATTTCAAGATGCACACCTTCACTCGGGTGACATCCTGCAGGGTCTGCCAGATGCTCCTGAGGGGAAC
ATTTTATCAAGGCTACTTATGTTTTAAGTGTGGAGCAAAAGCACATAAAGAATGTTTGGGAAGAGTAGAC
AATTGTGGCAGAGTTAATTCCGTTGAACAAGGGCCATTCAAACCACCAGAGAAACGGACCAATGGACTTC
GGAGAGCTTCCAGACAGGTGGACCCAGGTTTGCCGAAGATGCAGGTCATTAGGAACTACACTGGCACCCC
GGCCCCAGGGCTTCATGAAGGACCACCATTGCATATCCAGGCAGGCGACACTGTTGAACTTCTGAGAGGA
GATGCACACAGTGTGTTCTGGCAGGGACGAAACTTAGCTTCAGGAGAGGTTGGATTTTTCCCAAGTGATG
CTGTCAAACCCTCTCCATGTGTACCTAAACCAGTAGATTATTCTTGCCAACCCTGGTATGCTGGCCCAAT
GGAAAGATTGCAGGCAGAAACTGAACTTATTAACAGGGTGAATAGTACTTACCTTGTAAGGCACAGGACC
AAAGAATCTGGAGAATATGCAATTAGCATTAAGTACAATAATGAAGCAAAACACATCAAGATTTTAACAA
GAGATGGCTTTTTTCACATTGCAGAAAATAGAAAATTTAAAAGCTTAATGGAACTTGTGGAGTACTACAA
GCACCATTCTCTCAAAGAAGGGTTCAGGACCTTAGATACAACGCTACAGTTTCCATACAAGGAGCCAGAA
CAGCCAGCTGGACAGAGGGGTAATAGAACAGGCAACAGCTTGTTGAGTCCCAAAGTACTGGGTATTGCCA
TCGCTCGGTACGACTTCTGTGCAAGAGATATGCGGGAGCTCTCCCTATTGAAAGGAGACATGGTGAAGAT
TTACACGAAGATGAGTGCAAATGGCTGGTGGAGAGGTGAAGTAAATGGCAGGGTGGGCTGGTTTCCATCC
ACATATGTGGAAGAAGATGAATAA

Translation (847 aa):
MEPWKQCAQWLIHSKVLPPNHRVTWDSAQVFDLAQTLRDGVLLCQLLNNLRPHSINLKEINLRPQMSQFL
CLKNIRTFLAACCDTFGMRKSELFEAFDLFDVRDFGKVIETLSRLSRTPIALATGIRPFPTEESINDEDI
YKGLPDLIDETRVEDEEDLYDCVYGEDEGGEVYEDLMKAEEAQQPKSQENDIRSCCLAEIRQTEEKYTET
LESIEKYFMAPLKRFLTAAEFDSVFINIPDLVKVHRSLMQEIHDSIVNKDDQNLYQVFINYKERLVIYGQ
YCSGVESAISNLDYISKTKEDVKLKLEECSKRANNGKFTLRDLLVVPMQRVLKYHLLLQELVKHTHDPME
KANLKLALDAMKDLAQYVNEVKRDNETLREIKQFQLSIENLNQPVLLFGRPQGDGEIRITTLDKHTKQER
HIFLFDLAVIVCKRKGDNYEMKEIIDLQQYKIANNPTTDKENKKWSYGFYLIHTQGQNGLEFYCKTKDLK
KKWLEQFEMALSNIRPDYADSNFHDFKMHTFTRVTSCRVCQMLLRGTFYQGYLCFKCGAKAHKECLGRVD
NCGRVNSVEQGPFKPPEKRTNGLRRASRQVDPGLPKMQVIRNYTGTPAPGLHEGPPLHIQAGDTVELLRG
DAHSVFWQGRNLASGEVGFFPSDAVKPSPCVPKPVDYSCQPWYAGPMERLQAETELINRVNSTYLVRHRT
KESGEYAISIKYNNEAKHIKILTRDGFFHIAENRKFKSLMELVEYYKHHSLKEGFRTLDTTLQFPYKEPE
QPAGQRGNRTGNSLLSPKVLGIAIARYDFCARDMRELSLLKGDMVKIYTKMSANGWWRGEVNGRVGWFPS
TYVEEDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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