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Report for CCDS17795.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17795.1 Public Mus musculus 3 Plppr4 23 108 98 CCDS HistoryNCBI Gene:229791Re-query CCDS DB by CCDS ID:17795.1Re-query CCDS DB by GeneID:229791See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17795.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061071.12 ENSMUSP00000052306.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061071.12Link to Ensembl Protein Viewer:ENSMUSP00000052306.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000061071Re-query CCDS DB by Protein ID:ENSMUSP00000052306
Original member Current member NCBI NM_177664.5 NP_808332.3 Accepted alive Link to Nucleotide Sequence:NM_177664.5Link to Protein Sequence:NP_808332.3Re-query CCDS DB by Nucleotide ID:NM_177664Re-query CCDS DB by Protein ID:NP_808332Link to BLAST:NP_808332.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808332.3 766 Q7TME0 766 100% 0 0

Chromosomal Locations for CCDS 17795.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 117321906 117323237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 117325790 117325963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 117326685 117326742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 117328191 117328386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 117331648 117331777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 117335406 117335591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 117360024 117360248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2301 nt):
ATGCAGCGCGCTGGTTCCAGCGGTGCCCGCGGGGAATGTGACATCAGCGGCGCCGGGCGCTTGCGGCTGG
AGCAGGCAGCTCGCCTCGGTGGCCGCACGGTGCACACCTCGCCCGGGGGAGGACTTGGAGCCCGGCAGGC
GGCCGGGATGTCGGCGAAGGAGAGGCCAAAGGGCAAAGTGATCAAGGACAGCGTCACCCTCCTGCCCTGT
TTTTATTTCGTTGAGTTGCCTATATTGGCATCATCAGTGGTTAGCCTCTACTTCTTGGAACTCACAGATG
TCTTCAAACCTGTGCACTCTGGATTCAGTTGCTATGATAGGAGTCTTAGCATGCCGTACATTGAGCCAAC
CCAGGAGGCCATACCATTCCTTATGTTGCTTAGCTTGGCTTTTGCTGGACCTGCAATTACGATCATGGTG
GGTGAAGGGATTCTATACTGCTGCCTCTCCAAAAGAAGAAACGGAGCTGGATTGGAGCCTAACATCAACG
CCGGAGGCTGCAACTTCAACTCCTTTCTCAGGAGAGCCGTCAGATTCGTTGGTGTCCATGTGTTTGGACT
GTGCTCCACAGCTCTCATTACAGATATCATACAGCTCTCCACAGGATATCAGGCACCATACTTTCTGACT
GTGTGCAAGCCAAACTATACCTCTCTGAATGTATCCTGCAAAGAAAACTCCTACATCGTGGAAGATATTT
GTTCAGGATCTGACCTTACAGTCATCAACAGTGGCAGAAAGTCATTCCCATCCCAACATGCGACCCTCGC
TGCCTTTGCCGCTGTGTATGTGTCCATGTACTTCAATTCCACATTAACCGATTCCTCTAAGCTCCTGAAA
CCTCTCTTGGTCTTCACATTTATCATCTGTGGGATCATCTGCGGACTAACACGGATAACTCAATATAAGA
ACCATCCAGTCGATGTCTATTGTGGCTTTTTAATAGGAGGAGGAATCGCACTATATTTGGGCCTGTATGC
TGTAGGGAATTTTCTGCCTAGTGAAGACAGTATGCTTCAGCACAGAGATGCCCTCAGGTCACTGACAGAC
CTCAATCAAGACCCCAGCAGGGTTTTATCAGCTAAAAATGGTAGCAGTGGTGATGGAATTGCTCACACAG
AGGGTATCCTCAACCGAAACCACAGGGATGCAAGCTCCTTGACAAATCTCAAGAGGGCCAACGCTGACGT
AGAAATCATCACTCCTAGGAGCCCCATGGGGAAGGAAAGCATGGTGACCTTCAGCAACACGCTGCCCAGG
GCCAACACCCCCTCCGTGGAAGACCCAGTGAGAAGAAATGCGAGCATCCATGCCTCTATGGATTCTGCCC
GGTCCAAACAGCTCCTTACCCAGTGGAAGAGCAAGAATGAGAGTCGTAAGATGTCCCTACAGGTTATGGA
CACTGAACCAGAAGGCCAGTCACCACCCAGGTCCATAGAAATGAGGTCCAGCTCAGAGCCCTCGAGGGTG
GGGGTGAACGGAGATCACCATGTCCCGGGCAATCAGTACCTCAAGATACAGCCTGGCACAGTCCCCGGGT
GCAACAATAGTATGCCGGGAGGGCCACGCGTGTCCATCCAGTCCCGCCCTGGCTCTTCCCAATTGGTGCA
CATCCCCGAGGAGACCCAGGAAAACATAAGCACCTCGCCCAAGAGCAGTTCTGCGCGAGCCAAGTGGCTG
AAAGCAGCTGAGAAGACCGTGGCCTGTAACCGGAGCAACAACCAGCCACGCATCATGCAGGTCATCGCCA
TGTCCAAGCAGCAGGGCGTGCTGCAGAGCAGCCCCAAGAATGCCGAAGGTAGCACTGTCACCTGCACAGG
CTCCATCCGCTACAAAACCCTGACTGACCATGAGCCCAGCGGCATCGTGCGAGTGGAGGCTCATCCCGAG
AACAACAGGCCCATCATTCAGATCCCGTCGTCCACTGAGGGTGAAGGCAGCGGCTCCTGGAAGTGGAAAG
CTCCGGAGAAAAGTAGTCTGCGCCAAACCTATGAGCTCAACGACCTCAACAGGGACTCAGAAAGCTGTGA
GTCCCTCAAAGACAGCTTTGGTTCTGGAGATCGCAAAAGAAGCAACATCGACAGCAATGAGCACCACCAC
CACGGCATCACCACCATCCGAGTGACCCCGGTGGAGGGCAGCGAGATAGGCTCAGAGACGCTGTCCGTGT
CCTCCTCACGCGACTCCACCCTGCGCAGGAAGGGCAACATCATCTTGATCCCGGAAAGAAGCAACAGCCC
TGAAAACACAAGAAACATCTTCTACAAAGGAACCTCCCCCACGCGGGCTTATAAGGATTGA

Translation (766 aa):
MQRAGSSGARGECDISGAGRLRLEQAARLGGRTVHTSPGGGLGARQAAGMSAKERPKGKVIKDSVTLLPC
FYFVELPILASSVVSLYFLELTDVFKPVHSGFSCYDRSLSMPYIEPTQEAIPFLMLLSLAFAGPAITIMV
GEGILYCCLSKRRNGAGLEPNINAGGCNFNSFLRRAVRFVGVHVFGLCSTALITDIIQLSTGYQAPYFLT
VCKPNYTSLNVSCKENSYIVEDICSGSDLTVINSGRKSFPSQHATLAAFAAVYVSMYFNSTLTDSSKLLK
PLLVFTFIICGIICGLTRITQYKNHPVDVYCGFLIGGGIALYLGLYAVGNFLPSEDSMLQHRDALRSLTD
LNQDPSRVLSAKNGSSGDGIAHTEGILNRNHRDASSLTNLKRANADVEIITPRSPMGKESMVTFSNTLPR
ANTPSVEDPVRRNASIHASMDSARSKQLLTQWKSKNESRKMSLQVMDTEPEGQSPPRSIEMRSSSEPSRV
GVNGDHHVPGNQYLKIQPGTVPGCNNSMPGGPRVSIQSRPGSSQLVHIPEETQENISTSPKSSSARAKWL
KAAEKTVACNRSNNQPRIMQVIAMSKQQGVLQSSPKNAEGSTVTCTGSIRYKTLTDHEPSGIVRVEAHPE
NNRPIIQIPSSTEGEGSGSWKWKAPEKSSLRQTYELNDLNRDSESCESLKDSFGSGDRKRSNIDSNEHHH
HGITTIRVTPVEGSEIGSETLSVSSSRDSTLRRKGNIILIPERSNSPENTRNIFYKGTSPTRAYKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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