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Report for CCDS178.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
178.1 Public Homo sapiens 1 PADI1 24 110 108 CCDS HistoryNCBI Gene:29943Re-query CCDS DB by CCDS ID:178.1Re-query CCDS DB by GeneID:29943See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 178.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375471.5 ENSP00000364620.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375471.5Link to Ensembl Protein Viewer:ENSP00000364620.4Re-query CCDS DB by Nucleotide ID:ENST00000375471Re-query CCDS DB by Protein ID:ENSP00000364620
Original member Current member NCBI NM_013358.3 NP_037490.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_013358.3Link to Protein Sequence:NP_037490.2Re-query CCDS DB by Nucleotide ID:NM_013358Re-query CCDS DB by Protein ID:NP_037490Link to BLAST:NP_037490.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_037490.2 663 Q9ULC6 663 100% 0 0

Chromosomal Locations for CCDS 178.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 17205218 17205309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17222290 17222470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17223621 17223693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17224367 17224428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17225811 17225928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17226033 17226158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17228625 17228797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17228948 17229051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17230085 17230208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17230572 17230679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17232819 17232970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17237314 17237458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17238616 17238709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17239704 17239783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17240635 17240760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 17244010 17244243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1992 nt):
ATGGCCCCAAAGAGAGTTGTGCAGCTGTCCCTGAAGATGCCTACCCATGCCGTGTGTGTGGTGGGAGTCG
AGGCACATGTGGACATTCACAGTGATGTGCCCAAGGGTGCCAACAGCTTCAGGGTCTCTGGAAGCTCCGG
GGTGGAGGTCTTCATGGTCTACAACCGCACACGTGTGAAAGAGCCCATAGGCAAGGCCCGTTGGCCGCTA
GACACTGATGCAGACATGGTCGTATCTGTGGGCACAGCCAGTAAGGAATTAAAGGACTTCAAGGTGAGGG
TCTCCTACTTTGGGGAGCAGGAAGACCAAGCTCTGGGCCGCAGCGTGCTTTACCTCACTGGCGTCGATAT
TTCCCTTGAGGTTGACACAGGCCGCACAGGCAAGGTGAAGAGGAGCCAAGGGGACAAGAAAACCTGGCGC
TGGGGCCCTGAGGGCTATGGGGCTATCTTGCTGGTGAACTGTGACCGGGACAATCACAGGTCCGCAGAGC
CTGACCTCACCCACAGCTGGCTGATGTCGCTGGCTGACCTGCAGGACATGTCCCCAATGCTGCTGAGCTG
CAATGGCCCCGACAAGCTCTTCGACAGCCACAAGCTTGTCTTGAACGTGCCCTTTTCTGATTCCAAAAGA
GTGAGGGTCTTCTGTGCCAGGGGTGGGAATTCTCTCTCGGACTACAAACAGGTGCTGGGGCCCCAGTGTC
TGTCCTATGAAGTTGAGCGACAGCCAGGGGAGCAGGAGATCAAGTTCTATGTGGAGGGGCTGACCTTCCC
CGATGCCGATTTCCTAGGGCTGGTTTCCCTCAGTGTCAGCCTGGTGGACCCGGGGACCCTGCCCGAGGTG
ACCCTCTTCACAGACACTGTGGGCTTCCGCATGGCCCCCTGGATCATGACGCCCAACACTCAGCCTCCTG
AGGAGCTGTATGTGTGCAGAGTGATGGACACTCATGGCTCCAATGAGAAATTCCTGGAGGACATGTCTTA
TCTGACATTGAAAGCCAACTGCAAGCTGACCATCTGCCCTCAAGTTGAAAATCGAAATGACCGCTGGATC
CAGGACGAGATGGAGTTTGGCTACATCGAGGCCCCTCACAAATCCTTCCCCGTGGTCTTTGACTCCCCCA
GGAACAGGGGCCTGAAAGATTTCCCCTATAAGAGGATCCTGGGTCCTGACTTTGGATATGTTACCCGGGA
GATCCCGCTCCCTGGTCCCTCCAGCCTTGACTCCTTCGGCAACCTGGACGTCAGCCCGCCCGTCACGGTG
GGCGGCACGGAATACCCCCTGGGCCGGATCCTCATCGGGAGCAGCTTCCCCAAGTCCGGTGGGCGGCAGA
TGGCCAGGGCAGTGCGGAACTTCCTGAAGGCACAGCAGGTGCAGGCACCCGTGGAGCTCTACTCGGACTG
GCTCTCTGTGGGCCATGTGGACGAGTTTCTGACCTTTGTGCCTACCTCTGACCAAAAGGGCTTCCGGCTG
CTCCTGGCTAGCCCCAGCGCTTGCCTCAAACTCTTCCAAGAGAAGAAAGAAGAGGGTTATGGGGAGGCAG
CCCAGTTTGATGGGTTAAAACACCAGGCAAAAAGAAGCATTAATGAGATGCTGGCAGACAGACACCTCCA
GAGAGACAATCTTCATGCACAGAAATGCATTGACTGGAACCGTAATGTGCTGAAGCGGGAGCTGGGCCTG
GCAGAGAGTGACATCGTGGACATTCCCCAGCTCTTCTTCCTGAAAAACTTCTACGCGGAAGCCTTCTTCC
CAGACATGGTTAACATGGTGGTCTTAGGCAAGTACCTGGGCATCCCCAAGCCCTACGGGCCCATCATCAA
TGGCCGCTGCTGCCTGGAGGAGAAGGTGCAGTCCCTGCTGGAGCCTCTGGGCCTGCACTGCATCTTCATT
GATGACTACTTGTCCTACCACGAGCTGCAGGGGGAGATCCACTGTGGCACCAACGTGCGCAGGAAGCCCT
TTCCCTTCAAATGGTGGAACATGGTGCCCTGA

Translation (663 aa):
MAPKRVVQLSLKMPTHAVCVVGVEAHVDIHSDVPKGANSFRVSGSSGVEVFMVYNRTRVKEPIGKARWPL
DTDADMVVSVGTASKELKDFKVRVSYFGEQEDQALGRSVLYLTGVDISLEVDTGRTGKVKRSQGDKKTWR
WGPEGYGAILLVNCDRDNHRSAEPDLTHSWLMSLADLQDMSPMLLSCNGPDKLFDSHKLVLNVPFSDSKR
VRVFCARGGNSLSDYKQVLGPQCLSYEVERQPGEQEIKFYVEGLTFPDADFLGLVSLSVSLVDPGTLPEV
TLFTDTVGFRMAPWIMTPNTQPPEELYVCRVMDTHGSNEKFLEDMSYLTLKANCKLTICPQVENRNDRWI
QDEMEFGYIEAPHKSFPVVFDSPRNRGLKDFPYKRILGPDFGYVTREIPLPGPSSLDSFGNLDVSPPVTV
GGTEYPLGRILIGSSFPKSGGRQMARAVRNFLKAQQVQAPVELYSDWLSVGHVDEFLTFVPTSDQKGFRL
LLASPSACLKLFQEKKEEGYGEAAQFDGLKHQAKRSINEMLADRHLQRDNLHAQKCIDWNRNVLKRELGL
AESDIVDIPQLFFLKNFYAEAFFPDMVNMVVLGKYLGIPKPYGPIINGRCCLEEKVQSLLEPLGLHCIFI
DDYLSYHELQGEIHCGTNVRRKPFPFKWWNMVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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