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Report for CCDS17821.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17821.1 Public Mus musculus 3 Ugt8a 23 108 98 CCDS HistoryNCBI Gene:22239Re-query CCDS DB by CCDS ID:17821.1Re-query CCDS DB by GeneID:22239See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17821.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057944.11 ENSMUSP00000050852.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057944.11Link to Ensembl Protein Viewer:ENSMUSP00000050852.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000057944Re-query CCDS DB by Protein ID:ENSMUSP00000050852
Original member Current member EBI ENSMUST00000198610.1 ENSMUSP00000143605.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000198610.1Link to Ensembl Protein Viewer:ENSMUSP00000143605.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000198610Re-query CCDS DB by Protein ID:ENSMUSP00000143605
Original member Current member NCBI NM_011674.5 NP_035804.2 Accepted alive Link to Nucleotide Sequence:NM_011674.5Link to Protein Sequence:NP_035804.2Re-query CCDS DB by Nucleotide ID:NM_011674Re-query CCDS DB by Protein ID:NP_035804Link to BLAST:NP_035804.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035804.2 541 Q64676 541 100% 0 0

Chromosomal Locations for CCDS 17821.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 125867216 125867579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125871585 125871804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125874149 125874225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125875489 125875631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 125914638 125915459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGAAGTCTTACACTCCATATTTCATGCTCCTGTGGAGTGCTGTTGGAATAGCAAGGGCTGCTAAAATCA
TCATTGTGCCGCCAATTATGTTTGAAAGCCATTTGTACATTTTCAAGACACTAGCATCGGCCTTGCACGA
GAGAGGCCATCACACCGTGCTCCTCCTCTCAGAAGGCAGAGACATTGCCCCATCTAATCACTACAGCCTC
CAGCGGTACCCAGGCATCTTCAACAGTACCACCTCAGATGCTTTCCTGCAGTCTAAAATGAGGAATATTT
TTTCTGGGAGATTGACAGCAGTTGAACTGGTTGACATACTGGATCACTATACTAAGAATTGTGACATGAT
GGTTGGCAACCAAGCCCTAATCCAGGGTTTAAAAAAAGAAAAGTTTGACCTGCTACTGGTTGACCCCAAT
GATATGTGTGGATTTGTGATCGCCCATCTTTTAGGCGTTAAGTATGCTGTATTTTCTACTGGCCTTTGGT
ATCCTGCTGAAGTAGGAGCACCTGCTCCTTTAGCTTATGTCCCAGAGTTTAACTCACTCCTCACAGACCG
CATGAACTTCCTGGAAAGGATGAAAAATACTGGTGTTTACCTCATATCCAGAATAGGGGTTAGCTTTCTG
GTTCTCCCGAAATATGAGAGGATAATGCAGAAGTACAACCTGCTGCCTGCAAAGTCCATGTATGATTTGG
TTCATGGGTCCAGCCTATGGATGTTATGTACTGACGTAGCACTGGAGTTTCCAAGACCAACGCTGCCTAA
TGTTGTGTATGTTGGAGGAATCCTGACAAAGCCGGCCAGCCCACTGCCAGAAGATCTGCAGAGGTGGGTA
AGTGGTGCTCAGGAACATGGCTTTGTCCTGGTGTCTTTTGGAGCTGGTGTCAAGTATCTGTCAGAAGACA
TTGCCAACAAACTGGCAGGAGCTCTGGGGAGATTGCCTCAAAAAGTGATTTGGAGATTTTCTGGAACCAA
ACCAAAGAACCTAGGAAACAACACTAAGCTCATAGAATGGCTGCCTCAAAATGACCTGCTTGGCCATTCA
AATATCAGAGCCTTCCTAAGCCATGGTGGTTTGAACAGTATATTTGAAACTATGTATCATGGTGTCCCTG
TAGTGGGAATCCCACTGTTTGGAGACCATTATGATACTATGACTAGAGTACAGGCAAAAGGCATGGGGAT
CTTGTTAGAATGGAATACAGTTACTGAAGGAGAGCTGTATGATGCCCTGGTGAAAGTTATCAATAATCCC
AGTTATCGGCAGAGGGCTCAGAAGTTATCGGAAATTCACAAGGATCAACCCGGCCACCCTGTCAATCGGA
CTACCTATTGGATAGACTACATTCTTCGCCATGACGGAGCCCGTCACCTCCGTTCTGCTGTCCATCAGAT
CTCTTTCTGCCAGTATTTCCTACTGGATATTGCCTTTGTGCTTCTGCTTGGTGCTGTCTTGCTCTACTTC
ATATTGTCCTATGTGACAAAATTTATCTATAGAAAAATCAAAAGTCTATGGTCTAAAAATGAGCATAGCA
CAGTTAATGGACATTACCAAAATGGAATCCGCAATGGCAAATACAAAGGCAATGGTCGTGTTAAACACGA
AAAGAAGGTGAGATGA

Translation (541 aa):
MKSYTPYFMLLWSAVGIARAAKIIIVPPIMFESHLYIFKTLASALHERGHHTVLLLSEGRDIAPSNHYSL
QRYPGIFNSTTSDAFLQSKMRNIFSGRLTAVELVDILDHYTKNCDMMVGNQALIQGLKKEKFDLLLVDPN
DMCGFVIAHLLGVKYAVFSTGLWYPAEVGAPAPLAYVPEFNSLLTDRMNFLERMKNTGVYLISRIGVSFL
VLPKYERIMQKYNLLPAKSMYDLVHGSSLWMLCTDVALEFPRPTLPNVVYVGGILTKPASPLPEDLQRWV
SGAQEHGFVLVSFGAGVKYLSEDIANKLAGALGRLPQKVIWRFSGTKPKNLGNNTKLIEWLPQNDLLGHS
NIRAFLSHGGLNSIFETMYHGVPVVGIPLFGDHYDTMTRVQAKGMGILLEWNTVTEGELYDALVKVINNP
SYRQRAQKLSEIHKDQPGHPVNRTTYWIDYILRHDGARHLRSAVHQISFCQYFLLDIAFVLLLGAVLLYF
ILSYVTKFIYRKIKSLWSKNEHSTVNGHYQNGIRNGKYKGNGRVKHEKKVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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