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Report for CCDS17849.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17849.1 Public Mus musculus 3 Arhgef38 23 108 98 CCDS HistoryNCBI Gene:77669Re-query CCDS DB by CCDS ID:17849.1Re-query CCDS DB by GeneID:77669See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17849.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000161022.8 ENSMUSP00000124280.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161022.8Link to Ensembl Protein Viewer:ENSMUSP00000124280.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000161022Re-query CCDS DB by Protein ID:ENSMUSP00000124280
Original member Current member NCBI NM_029953.1 NP_084229.1 Accepted alive Link to Nucleotide Sequence:NM_029953.1Link to Protein Sequence:NP_084229.1Re-query CCDS DB by Nucleotide ID:NM_029953Re-query CCDS DB by Protein ID:NP_084229Link to BLAST:NP_084229.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084229.1 219 Q80VK6-1 219 100% 0 0

Chromosomal Locations for CCDS 17849.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 133160715 133160866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133176371 133176494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133206893 133207080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133234628 133234823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (660 nt):
ATGGAGCCCAGAGAAGCCGCTGGGAAGGAAACCATGGGAAGCAAGAAGAAGAACTTGACTTTCTTGAGAT
CCAGGCTGTATATGCTGGAGAGGAGGAAGACGGATACTGTGGTGGACAGCAGTGTTTCTGGGGACCACTC
TGGTTCCTTGAGGAGAAGCCAGTCTGACAGGACCGAATACAACCAGAAACTACAAGAAAAGATGACTCCA
CAGGCTGAGTGCTCCTCAGCAGAAACTCCCACCCCTGAGGATGAGCAACAAGTGGGACGGATGATGGCAA
AGCGGGCCAAGATCATCAGGGAGCTGATACAGACGGAGAGGGATTACCTCACAGATCTAGAGCTGTGCCT
TAGAGAAGTGGTCCAGCCACTGCGAAGCAAACAGATTGACAGGCTGGACGTGGAGGGCTTGTTTAGCAAC
ATTGAATCTGTGCATCAAATATCAGCCAAGCTACTGTCCTTGCTGGAAGAGGCCACAACAGACGTGGAAC
CGGCCATGCAAGTAATCGGAGAGGTATTCTTGCAGATTAAAGGACCGCTGGAGGATATTTATAAAATCTA
TTGCTATCACCATGATGAAGCACACAGCGTCCTAGAGTCCTATGAAAAGGAAGAGGAGCTGAAGCAACAT
CTGAGCCACTGCCTCCAGTCCTTAAAGTAA

Translation (219 aa):
MEPREAAGKETMGSKKKNLTFLRSRLYMLERRKTDTVVDSSVSGDHSGSLRRSQSDRTEYNQKLQEKMTP
QAECSSAETPTPEDEQQVGRMMAKRAKIIRELIQTERDYLTDLELCLREVVQPLRSKQIDRLDVEGLFSN
IESVHQISAKLLSLLEEATTDVEPAMQVIGEVFLQIKGPLEDIYKIYCYHHDEAHSVLESYEKEEELKQH
LSHCLQSLK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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