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Report for CCDS17881.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17881.1 Public Mus musculus 3 Kyat3 23 108 98 CCDS HistoryNCBI Gene:229905Re-query CCDS DB by CCDS ID:17881.1Re-query CCDS DB by GeneID:229905See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17881.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044392.10 ENSMUSP00000041675.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044392.10Link to Ensembl Protein Viewer:ENSMUSP00000041675.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000044392Re-query CCDS DB by Protein ID:ENSMUSP00000041675
Original member Current member NCBI NM_173763.4 NP_776124.1 Accepted alive Link to Nucleotide Sequence:NM_173763.4Link to Protein Sequence:NP_776124.1Re-query CCDS DB by Nucleotide ID:NM_173763Re-query CCDS DB by Protein ID:NP_776124Link to BLAST:NP_776124.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776124.1 420 Q71RI9-2 420 100% 0 0

Chromosomal Locations for CCDS 17881.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 142718379 142718434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142720361 142720505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142723115 142723264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142725421 142725507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142725964 142726089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142726182 142726302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142729759 142729835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142731202 142731291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142734474 142734660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142737772 142737845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142738225 142738311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142744071 142744133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGGCTTTGAAATTCAAAAACGCCAAACGAATCGAAGGCCTGGACAGCAATGTGTGGGTTGAATTTACTA
AGTTGGCTGCGGATCCTTCTGTGGTGAACCTTGGACAAGGCTTTCCAGATATATCCCCTCCTTCATACGT
AAAAGAAGAGTTATCAAAGGCTGCATTTATTGATAACATGAATCAATACACAAGAGGCTTTGGTCATCCA
GCACTTGTGAAAGCTCTGTCCTGCTTATATGGAAAGATTTATCAACGTCAAATTGATCCAAACGAAGAAA
TCCTTGTGGCCGTGGGGGCATATGGATCTCTCTTTAACTCCATCCAAGGATTGGTGGACCCAGGAGATGA
AGTGATAATTATGGTGCCTTTTTACGACTGTTATGAGCCCATGGTGAGAATGGCCGGAGCAGTGCCTGTG
TTTATTCCCCTGAGATCTAAACCTACTGACGGGATGAAGTGGACTAGCTCTGACTGGACATTCGATCCTC
GAGAACTGGAAAGTAAATTCAGTTCCAAAACGAAAGCCATAATATTAAATACTCCACACAACCCCCTCGG
CAAGGTGTATACCAGACAGGAGCTGCAAGTCATTGCTGACCTTTGCGTCAAGCACGACACTCTGTGCATC
AGCGATGAGGTTTATGAATGGCTTGTCTATACTGGACATACGCACGTAAAAATAGCCACTCTTCCAGGTA
TGTGGGAGAGAACAATAACAATAGGAAGTGCTGGCAAGACATTCAGTGTGACTGGCTGGAAGCTCGGCTG
GAGCATTGGCCCTGCTCACCTGATAAAGCATTTACAGACCGTTCAACAGAACAGTTTTTACACGTGTGCG
ACTCCTTTACAGGCAGCCTTGGCCGAGGCGTTTTGGATCGATATCAAGCGCATGGATGACCCTGAGTGTT
ACTTTAATTCTCTGCCAAAGGAATTAGAAGTAAAGAGAGATCGGATGGTCCGTTTACTTAACAGCGTTGG
CCTGAAACCCATTGTTCCTGACGGGGGTTACTTCATCATTGCTGATGTGTCTTCATTAGGTGCTGACCTC
TCGGACATGAACAGCGATGAGCCTTATGACTATAAGTTTGTGAAGTGGATGACGAAACATAAGAAACTGA
CAGCCATTCCTGTTTCTGCCTTCTGCGACTCCAAGTCTAAACCACACTTTGAGAAGCTGGTGCGGTTTTG
CTTTATTAAAAAAGACAGCACACTGGATGCTGCCGAAGAAATCTTCAGGGCCTGGAACAGCCAGAAGTCT
TGA

Translation (420 aa):
MALKFKNAKRIEGLDSNVWVEFTKLAADPSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTRGFGHP
ALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPV
FIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCI
SDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGWKLGWSIGPAHLIKHLQTVQQNSFYTCA
TPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLKPIVPDGGYFIIADVSSLGADL
SDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDSTLDAAEEIFRAWNSQKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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