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Report for CCDS17900.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17900.1 Public Mus musculus 3 Mcoln3 23 108 98 CCDS HistoryNCBI Gene:171166Re-query CCDS DB by CCDS ID:17900.1Re-query CCDS DB by GeneID:171166See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17900.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039450.4 ENSMUSP00000038801.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039450.4Link to Ensembl Protein Viewer:ENSMUSP00000038801.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000039450Re-query CCDS DB by Protein ID:ENSMUSP00000038801
Original member Current member NCBI NM_134160.1 NP_598921.1 Accepted alive Link to Nucleotide Sequence:NM_134160.1Link to Protein Sequence:NP_598921.1Re-query CCDS DB by Nucleotide ID:NM_134160Re-query CCDS DB by Protein ID:NP_598921Link to BLAST:NP_598921.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598921.1 553 Q8R4F0 553 100% 0 0

Chromosomal Locations for CCDS 17900.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 146121793 146122020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146124745 146124912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146128103 146128256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146128883 146128967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146129096 146129192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146131147 146131246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146133650 146133762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146133840 146133989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146137258 146137359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146137447 146137569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146139371 146139577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146140464 146140598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1662 nt):
ATGGCAAATCCCGAGGTGCTGGTTAGCAGCTGCAGAGCTCGCCAAGATGAAAGCCCCTGCACTTTCCACC
CGAGCTCGTCCCCGTCAGAGCAGCTTCTCTTAGAAGACCAGATGAGGCGGAAACTCAAGTTCTTTTTTAT
GAATCCTTGTGAGAAGTTCTGGGCTCGGGGTAGGAAGCCATGGAAACTTGCCATACAGATTCTGAAAATC
GCGATGGTGACTATCCAGCTGGTTCTGTTTGGACTAAGTAACCAGATGGTAGTAGCTTTCAAAGAGGAGA
ACACTATAGCCTTCAAACACCTCTTCCTAAAGGGCTACATGGATCGAATGGACGACACCTATGCAGTGTA
CACTCAGAGTGAAGTGTATGACCAGATCATCTTTGCAGTGACCCAGTACTTGCAGCTTCAGAACATCTCC
GTGGGCAATCACGCTTATGAGAACAAGGGGACTAAGCAGTCGGCGATGGCAATCTGTCAGCACTTCTACA
GGCAAGGAACCATCTGCCCCGGGAACGACACCTTTGACATCGATCCAGAAGTTGAAACAGAATGTTTCCT
TGTAGAGCCAGATGAAGCTTCCCACCTTGGAACGCCTGGAGAAAATAAACTCAACCTGAGCCTGGACTTC
CACAGACTTCTGACGGTGGAGCTCCAGTTTAAGCTCAAAGCCATCAATCTGCAGACAGTTCGACACCAGG
AGCTTCCTGACTGTTACGACTTTACGCTGACTATAACATTCGACAACAAGGCTCACAGTGGAAGAATCAA
AATAAGCTTAGACAACGACATTTCTATCAAAGAATGCAAAGACTGGCATGTGTCTGGATCAATTCAGAAG
AACACACACTACATGATGATCTTTGATGCCTTTGTCATTCTGACCTGCTTGGCCTCACTGGTGCTGTGTG
CCAGGTCTGTGATTAGGGGTCTTCAGCTTCAGCAGGAGTTTGTCAACTTCTTCCTTCTTCACTACAAGAA
GGAAGTTTCGGCCTCTGATCAGATGGAGTTCATCAACGGGTGGTACATTATGATCATCATTAGTGACATA
TTGACAATCGTTGGATCAGTTCTGAAAATGGAAATCCAAGCCAAGAGTCTCACAAGCTATGATGTCTGCA
GCATACTTCTCGGGACGTCAACTATGCTCGTGTGGCTTGGAGTTATCCGATACCTGGGTTTCTTTGCGAA
GTACAATCTCCTTATTCTGACCCTCCAGGCAGCGCTGCCCAACGTCATGAGGTTCTGTTGCTGCGCTGCT
ATGATCTATCTAGGCTATTGCTTTTGCGGATGGATTGTGCTGGGCCCTTACCATGAGAAGTTCCGTTCCC
TGAACAGGGTCTCCGAGTGCCTGTTCTCGCTGATAAACGGAGACGATATGTTTTCCACATTTGCGAAAAT
GCAGCAGAAGAGTTACCTGGTGTGGCTGTTCAGCCGAGTCTACCTGTACTCGTTCATCAGCCTCTTCATT
TACATGATTCTGAGCCTTTTCATCGCGCTCATCACAGACACATACGAAACAATTAAGCACTACCAGCAAG
ATGGCTTCCCAGAGACGGAACTTCGAAAGTTTATAGCGGAATGCAAAGACCTCCCCAACTCCGGAAAATA
CAGATTAGAAGATGACCCTCCGGGTTCTTTACTCTGCTGCTGCAAAAAGTAA

Translation (553 aa):
MANPEVLVSSCRARQDESPCTFHPSSSPSEQLLLEDQMRRKLKFFFMNPCEKFWARGRKPWKLAIQILKI
AMVTIQLVLFGLSNQMVVAFKEENTIAFKHLFLKGYMDRMDDTYAVYTQSEVYDQIIFAVTQYLQLQNIS
VGNHAYENKGTKQSAMAICQHFYRQGTICPGNDTFDIDPEVETECFLVEPDEASHLGTPGENKLNLSLDF
HRLLTVELQFKLKAINLQTVRHQELPDCYDFTLTITFDNKAHSGRIKISLDNDISIKECKDWHVSGSIQK
NTHYMMIFDAFVILTCLASLVLCARSVIRGLQLQQEFVNFFLLHYKKEVSASDQMEFINGWYIMIIISDI
LTIVGSVLKMEIQAKSLTSYDVCSILLGTSTMLVWLGVIRYLGFFAKYNLLILTLQAALPNVMRFCCCAA
MIYLGYCFCGWIVLGPYHEKFRSLNRVSECLFSLINGDDMFSTFAKMQQKSYLVWLFSRVYLYSFISLFI
YMILSLFIALITDTYETIKHYQQDGFPETELRKFIAECKDLPNSGKYRLEDDPPGSLLCCCKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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