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Report for CCDS17950.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17950.1 Public Mus musculus 4 Cyp7a1 23 108 98 CCDS HistoryNCBI Gene:13122Re-query CCDS DB by CCDS ID:17950.1Re-query CCDS DB by GeneID:13122See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17950.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029905.1 ENSMUSP00000029905.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029905.1Link to Ensembl Protein Viewer:ENSMUSP00000029905.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000029905Re-query CCDS DB by Protein ID:ENSMUSP00000029905
Original member Current member NCBI NM_007824.3 NP_031850.2 Accepted alive Link to Nucleotide Sequence:NM_007824.3Link to Protein Sequence:NP_031850.2Re-query CCDS DB by Nucleotide ID:NM_007824Re-query CCDS DB by Protein ID:NP_031850Link to BLAST:NP_031850.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031850.2 503 Q64505 503 100% 0 0

Chromosomal Locations for CCDS 17950.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 6268212 6268508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6269056 6269231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6271116 6271246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6272304 6272890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6273584 6273824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 6275492 6275571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1512 nt):
ATGATGAGCATTTCTTTGATCTGGGGGATTGCTGTGGTAGTGAGCTGTTGCATATGGTTTATCATTGGAA
TAAGGAGAAGGAAAGTAGGTGAACCTCCTTTGGACAACGGGTTGATTCCATACCTGGGCTGTGCTCTGAA
GTTCGGATCCAATCCTCTTGAATTCCTAAGAGCAAAGCAAAGGAAACATGGCCATGTTTTTACCTGCAAA
CTGATGGGGAAATATGTCCACTTCATCACAAACTCCCTGTCATACCACAAAGTCTTATGTCACGGAAAAT
ATTTTGACTGGAAAAAATTTCATTACACTACTTCTGCGAAGGCATTTGGACACAGAAGCATAGACCCAAG
TGATGGAAATACCACGGAAAACATAAACAAGACTTTTAACAAAACCCTCCAGGGAGATGCTCTGTGTTCA
CTCTCTGAAGCCATGATGCAAAACCTCCAATCTGTCATGAGACCTCCGGGCCTTCCTAAATCAAAGAGCG
CTGTCTGGGTCACGGAAGGGATGTATGCCTTCTGCTACCGAGTGATGTTTGAAGCCGGATATCTAACGCT
GTTTGGCAAAGATATTTCAAAGACAGACTCACAAAGAGCATTTATTCAAAACAACCTTGACAGCTTCAAA
CAATTTGACCAAGTATTTCCGGCACTAGTGGCGGGCGTCCCTATTCACTTGTTCAAGACCGCACATAAAG
CCCGGGAAAGGCTGGCTGAGAGCTTGAAGCACAAGAACCTGTACATGAGGGACCAGGTCTCTGAACTGAT
CCGTCTACGCATGTTTCTCAACGATACACTCTCCACCTTTGATGACATGGAGAAGGCTAAGACGCACCTC
GTGATCCTCTGGGCATCTCAAGCAAACACCATTCCTGCAACCTTCTGGAGCTTATTTCAAATGATCAGGA
GCCCTGAAGCAATGAAAGCAGCCTCTGAAGAAGTGAATGGAGCATTACAGAGTGCTGGCCAAGAGCTCAG
CTCTGGAGGGAATGCCATTTACTTGGATCAAGAGCAACTAAACAACCTGCCAGTACTAGATAGCATCATC
AAGGAGGCTCTGCGGCTCTCCAGTGCATCCTTGAATATCCGGACAGCTAAGGAGGACTTCACTCTACACC
TTGAGGATGGTTCCTATAACATTCGAAAAGATGACATCATAGCTCTTTACCCACAGTTAATGCACTTGGA
TCCTGAAATCTACCCAGACCCTTTGACTTTTAAATACGACCGGTACCTTGATGAAAGTGGGAAAGCAAAG
ACCACCTTCTATAGAAATGGAAACAAGCTGAAGTATTTCTACATGCCCTTTGGATCAGGAGCTACAATAT
GTCCTGGAAGACTATTTGCTGTCCAAGAAATCAAGCAATTTTTGATTCTGATGCTGTCTTACTTTGAACT
GGAGCTTGTAGAGAGCCACACCAAGTGTCCCCCTCTAGATCAGTCCCGGGCAGGCTTGGGAATTTTGCCA
CCACTAAATGATATTGAGTTTAAATATAAACTGAAACACTGA

Translation (503 aa):
MMSISLIWGIAVVVSCCIWFIIGIRRRKVGEPPLDNGLIPYLGCALKFGSNPLEFLRAKQRKHGHVFTCK
LMGKYVHFITNSLSYHKVLCHGKYFDWKKFHYTTSAKAFGHRSIDPSDGNTTENINKTFNKTLQGDALCS
LSEAMMQNLQSVMRPPGLPKSKSAVWVTEGMYAFCYRVMFEAGYLTLFGKDISKTDSQRAFIQNNLDSFK
QFDQVFPALVAGVPIHLFKTAHKARERLAESLKHKNLYMRDQVSELIRLRMFLNDTLSTFDDMEKAKTHL
VILWASQANTIPATFWSLFQMIRSPEAMKAASEEVNGALQSAGQELSSGGNAIYLDQEQLNNLPVLDSII
KEALRLSSASLNIRTAKEDFTLHLEDGSYNIRKDDIIALYPQLMHLDPEIYPDPLTFKYDRYLDESGKAK
TTFYRNGNKLKYFYMPFGSGATICPGRLFAVQEIKQFLILMLSYFELELVESHTKCPPLDQSRAGLGILP
PLNDIEFKYKLKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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