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Report for CCDS17957.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17957.1 Public Mus musculus 4 Clvs1 23 108 98 CCDS HistoryNCBI Gene:74438Re-query CCDS DB by CCDS ID:17957.1Re-query CCDS DB by GeneID:74438See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17957.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038841.13 ENSMUSP00000035649.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038841.13Link to Ensembl Protein Viewer:ENSMUSP00000035649.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000038841Re-query CCDS DB by Protein ID:ENSMUSP00000035649
Original member Current member EBI ENSMUST00000108348.1 ENSMUSP00000103985.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108348.1Link to Ensembl Protein Viewer:ENSMUSP00000103985.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108348Re-query CCDS DB by Protein ID:ENSMUSP00000103985
Original member Current member NCBI NM_001355183.1 NP_001342112.1 Accepted alive Link to Nucleotide Sequence:NM_001355183.1Link to Protein Sequence:NP_001342112.1Re-query CCDS DB by Nucleotide ID:NM_001355183Re-query CCDS DB by Protein ID:NP_001342112Link to BLAST:NP_001342112.1
Original member Current member NCBI NM_028940.2 NP_083216.1 Accepted alive Link to Nucleotide Sequence:NM_028940.2Link to Protein Sequence:NP_083216.1Re-query CCDS DB by Nucleotide ID:NM_028940Re-query CCDS DB by Protein ID:NP_083216Link to BLAST:NP_083216.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342112.1 354 Q9D4C9-1 354 100% 0 0
NP_083216.1 354 Q9D4C9-1 354 100% 0 0

Chromosomal Locations for CCDS 17957.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 9281558 9282012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9350647 9350821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9424186 9424296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9429740 9429975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 9449390 9449477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGGGACCAGTTTCTGTTCTTCCCTCACCTCAGAGCTTAAGCACTTGGGAAGGAGATTTGGCCAAGATGA
CGCATTTGCAGGCTGGGCTCAGTCCAGACACTATAGAAAAAGCTCGTCTGGAACTGAATGAAAACCCAGA
TATTTTACATCAGGACATTCAACAAGTCAGAGACATGATCATCACCAGACCAGACATTGGGTTTTTACGT
ACAGATGATGCCTTCATTCTGCGATTTCTTCGAGCCAGGAAGTTTCACCAAGCCGATGCCTTCAGACTCC
TGGCCCAGTACTTTCAGTACCGCCAGCTGAACCTGGACATGTTCAAAAACTTTAAGGCAGATGATCCCGG
GATTAAGAGGGCTTTGATCGACGGATTCCCCGGAGTGCTGGAAAATCGTGACCACTATGGCAGGAAGATT
CTCTTGCTGTTTGCTGCCAATTGGGATCAGAGTAGGAACTCCTTCACGGACATCCTCCGTGCCATTCTCC
TGTCCTTGGAAGTCCTTATTGAAGATCCCGAGCTCCAGATAAACGGTTTCATTTTAATTATAGACTGGAG
CAACTTTTCCTTCAAGCAAGCATCCAAGCTGACACCCTCTATCCTGAAACTGGCCATTGAAGGGCTGCAG
GACAGCTTTCCTGCTCGCTTTGGAGGCGTCCATTTTGTCAACCAGCCCTGGTACATCCACGCCCTGTACA
CACTCATCAAGCCATTCCTTAAGGACAAGACAAGAAAACGGATTTTCCTACATGGAAACAATTTAAACAG
TCTTCACCAGCTAATACACCCCGAGTTCCTGCCCTCTGAATTTGGAGGAACCCTTCCTCCTTACGACATG
GGGACTTGGGCCCGGACATTACTTGGCCCTGACTACAGCGATGAAAATGACTATACCCATACTTCCTACA
ATGCCATGCATGTGAAACACACCTGTTCCAACCTGGAGAGAGAGTGCTCACCCAAGCCCATGAAAAGATC
TCAGTCTGTGGTAGAAGCTGGGACCTTGAAACATGAAGAGAAAGGAGAAAATGAGAACACCCAGCCACTG
CTGGCTCTGGACTGA

Translation (354 aa):
MGPVSVLPSPQSLSTWEGDLAKMTHLQAGLSPDTIEKARLELNENPDILHQDIQQVRDMIITRPDIGFLR
TDDAFILRFLRARKFHQADAFRLLAQYFQYRQLNLDMFKNFKADDPGIKRALIDGFPGVLENRDHYGRKI
LLLFAANWDQSRNSFTDILRAILLSLEVLIEDPELQINGFILIIDWSNFSFKQASKLTPSILKLAIEGLQ
DSFPARFGGVHFVNQPWYIHALYTLIKPFLKDKTRKRIFLHGNNLNSLHQLIHPEFLPSEFGGTLPPYDM
GTWARTLLGPDYSDENDYTHTSYNAMHVKHTCSNLERECSPKPMKRSQSVVEAGTLKHEEKGENENTQPL
LALD


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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