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Report for CCDS17990.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17990.1 Public Mus musculus 4 Cngb3 23 108 98 CCDS HistoryNCBI Gene:30952Re-query CCDS DB by CCDS ID:17990.1Re-query CCDS DB by GeneID:30952See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17990.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102999.1 ENSMUSP00000100064.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102999.1Link to Ensembl Protein Viewer:ENSMUSP00000100064.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102999Re-query CCDS DB by Protein ID:ENSMUSP00000100064
Original member Current member NCBI NM_013927.2 NP_038955.1 Accepted alive Link to Nucleotide Sequence:NM_013927.2Link to Protein Sequence:NP_038955.1Re-query CCDS DB by Nucleotide ID:NM_013927Re-query CCDS DB by Protein ID:NP_038955Link to BLAST:NP_038955.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038955.1 694 Q9JJZ9 694 100% 0 0

Chromosomal Locations for CCDS 17990.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 19280933 19281043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19283506 19283581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19309531 19309657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19364112 19364269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19366413 19366559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19367712 19367920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19375200 19375250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19379226 19379312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19395926 19395990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19396680 19396802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19415646 19415787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19425490 19425649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19428468 19428565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19461675 19461758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19481831 19481949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19504442 19504588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19505173 19505347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 19508078 19508083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2085 nt):
ATGTTAAAATCACTGACAGTAAAATTCAACAAAGTGAATCCCATGGAAGGGAGAATGGAGAAGAAACTCT
GCCCCAACCTGAGCAGTCTTTCTCAGCCAACCATAGCACAGGGAGACAACCAAAGTGAAAAAGAACCTCT
GAGGAGCAGGACACCAATCACATTTGAAAAGTCACACAGCAAAGAAGACAACAGCACTGGGGAAAACTCT
CTCAGAGATTTCACCCCAAATCCTGACCCTGAATGTCGAGCAGAACTCACCAGAACAATGGCAGAGATGG
AGAAAACTAGGACTGGGAAAGAAAGGCCAGTCAGCTTTAAGACCAAAGTGCTTGAAACCTCAATTATAAA
TGAATATACTGATGCCCACCTACACAACCTAGTGGAAAGAATGCGTGAAAGGACTGCTCTCTACAAGAAA
ACATTGACAGAGGAAGAAAATTTCCCAGAAGTGGAAGCCAGCTCTCAGACTGCAATGTCTACAAATATAT
CACCAAAACAAGAGAACAATTCCAAGCTAAAAGAACACCAAGACACGTTTTCTTTCAAACCCCAGAGAGT
CCCAGTAAAAGAGCACCTACGAAGAATGATACTTCCCAGAAGCATAGACTCCTACACAGATCGGGTCTAT
CTCTTGTGGCTCCTGCTTGTCACCATTGCGTATAACTGGAACTGTTGGCTGCTACCAGTGCGCCTCGTCT
TTCCATGCCAAACACCAGATAACAAGAACTACTGGATTATTACTGACATCGTATGTGATATCATCTACCT
TTGTGATATACTATTGATCCAGCCAAGACTCCAATTTGTAAGAGGAGGAGAAATTATTGTAGATTCAAAT
GAGCTGAAGAGGAACTACCGGAGTTCTACAAAGTTTCGGATGGATGTGGCATCTCTACTGCCATTCGAAG
TTCTCTACATCTTCTTTGGAGTTAATCCAATATTCAGAGCAAATCGGATATTAAAGTATACTTCATTCTT
TGAGTTTAACCATCACCTGGAGTCTATAATGGACAAAGCATATGTCTACAGAGTCATCCGAACAACTGGC
TACTTGCTGTTTCTCCTGCACATTAACGCCTGTGTTTATTACTGGGCTTCAGACTATGAAGGAATTGGCT
CAACTAAATGGGTCTATAATGGTGAAGGCAACAAGTATCTGCGATGCTTTTATTGGGCAGTTCGAACTTT
AATTACTATCGGGGGCCTTCCAGAGCCACAGACTTCATTTGAAATTGTTTTTCAATTCTTGAATTTTTTC
TCTGGGGTTTTTGTTTTCTCCAGCTTAATTGGTCAGATGCGTGATGTGATTGGGGCAGCAACAGCCAATC
AGAACTACTTCCAAGCCTGCATGGACCATATCATTGCCTACATGAACAAATACTCTATTCCTCAGAGTGT
GCAGTATCGAGTTCGGACTTGGCTGGAATATACATGGAACTCACAAAGAATCCTAGATGAGTCCAACTTG
CTTGAGAACCTCCCGACAGCAATGCAGTTGTCTATTGCCCTTGACATAAACTTCAGTATCATCGACAAGG
TGGAGTTATTCAAGGGCTGTGACACACAGATGATTTATGACCTGCTGCTAAGATTGAAATCCACTATTTA
TTTACCTGGTGACTTTGTCTGCAAAAAGGGAGAAATTGGAAAAGAAATGTACATCATCAAACACGGAGAA
GTCCAAGTCCTTGGAGGCCCTGATGGTGCTCAAGTTCTGGTTACTCTGAAAGCTGGGTCAGTGTTTGGAG
AAATAAGCCTTCTGGCAAAAGGAGGAGGAAATCGCCGGACAGCTGATGTTGTGGCCCACGGATTTGCCAA
TCTTTTAACTCTGGACAAAAAGACTCTCCAAGAAATTCTGCTGCATTATCCAACTTCTAAAAAGCTCCTC
ATGAAGAAAGCCAAAATTCTTTTAAGCCAGAAGGGAAAGACCACTCAGGCAATCCCTGCAAGACCAGGAC
CTGCCTTTCTTTTCCCACCAAAAGAAGAGACACCCCGAATGCTTAAAGTTCTCCTAGGAAACACAGGAAA
GGTGGACCTTGGAAGACTCCTTAAAGGAAAGAGAAAAACAACCACTCAGAAATAA

Translation (694 aa):
MLKSLTVKFNKVNPMEGRMEKKLCPNLSSLSQPTIAQGDNQSEKEPLRSRTPITFEKSHSKEDNSTGENS
LRDFTPNPDPECRAELTRTMAEMEKTRTGKERPVSFKTKVLETSIINEYTDAHLHNLVERMRERTALYKK
TLTEEENFPEVEASSQTAMSTNISPKQENNSKLKEHQDTFSFKPQRVPVKEHLRRMILPRSIDSYTDRVY
LLWLLLVTIAYNWNCWLLPVRLVFPCQTPDNKNYWIITDIVCDIIYLCDILLIQPRLQFVRGGEIIVDSN
ELKRNYRSSTKFRMDVASLLPFEVLYIFFGVNPIFRANRILKYTSFFEFNHHLESIMDKAYVYRVIRTTG
YLLFLLHINACVYYWASDYEGIGSTKWVYNGEGNKYLRCFYWAVRTLITIGGLPEPQTSFEIVFQFLNFF
SGVFVFSSLIGQMRDVIGAATANQNYFQACMDHIIAYMNKYSIPQSVQYRVRTWLEYTWNSQRILDESNL
LENLPTAMQLSIALDINFSIIDKVELFKGCDTQMIYDLLLRLKSTIYLPGDFVCKKGEIGKEMYIIKHGE
VQVLGGPDGAQVLVTLKAGSVFGEISLLAKGGGNRRTADVVAHGFANLLTLDKKTLQEILLHYPTSKKLL
MKKAKILLSQKGKTTQAIPARPGPAFLFPPKEETPRMLKVLLGNTGKVDLGRLLKGKRKTTTQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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