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Report for CCDS18031.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18031.2 Public Mus musculus 4 Cfap206 23 108 98 CCDS HistoryNCBI Gene:69329Re-query CCDS DB by CCDS ID:18031.2Re-query CCDS DB by GeneID:69329See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 18031.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 18031.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108136.7 ENSMUSP00000103771.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108136.7Link to Ensembl Protein Viewer:ENSMUSP00000103771.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108136Re-query CCDS DB by Protein ID:ENSMUSP00000103771
Original member Current member NCBI NM_027041.4 NP_081317.4 Accepted alive Link to Nucleotide Sequence:NM_027041.4Link to Protein Sequence:NP_081317.4Re-query CCDS DB by Nucleotide ID:NM_027041Re-query CCDS DB by Protein ID:NP_081317Link to BLAST:NP_081317.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081317.4 504 Q6PE87-2 504 100% 0 0

Chromosomal Locations for CCDS 18031.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 34711381 34711595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34714395 34714535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34716305 34716503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34719045 34719164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34719573 34719781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34721416 34721574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34722608 34722796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34724815 34724905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34727905 34727988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 34728796 34728903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGCCTCCCACTCAAGCAGAAAGTGTGATAAAGAATATCATACGAGAAATAGGACAAGAATGTGCAGCCC
ACGGAGAGATCGCTTCAGAGACGGTGGTTGCTTTTATGGTGAAAGCTGTCGTCCTAGATCCCAGCAATGG
CTTTAACATGGATAGGACCCTCATCAAGACTGACGTGCAGAAACTTGTTAAGCTTTGTGTGGCACGGCTA
CTGGACAATAAAAATCCATCCCTGGACACCATTAAGATGCAGGTCTACTTTGATATGAACTATACAAGTC
GAGAGGACTTTCTTGAAGAACATCACCGGGTCTTAGAATCCAGGTTAGGCATTGTTAGCAGAGAAATCAC
AGACAACAGAGCAAGTGCTAGGGAAGAGCTGGAAAATCTCTACAGAAAGATCGTCAGCTACGTGCTCCTG
CGCTCTGGGCTTGGATCCCCCACAGACATCAAGATTGTCAGAGAGGCAACAGCCGCTCTGCAGAGCGTTT
TCCCTCAGGCTGAGCTCGCCACGTTTCTGACCCTCAGTAAGAAGGACAAAGAGCGCCAGTTGAAAGAGCT
CACCATGATTGTTACCGGAATTCGCTTATTTAACAGAGACTGTGGAAAAGGAGGAGAAGGCATTGATGAT
TTGCCGGCCATTCTCCACGAAGCGATCCCAACCACCACACAGCACATAGACTCCCAGCTTCAGATTGCCC
AGGACCAGGCGTTTCGCTACACGGCCATCCTTGAGAAAGTAACCAACAACCCCCTCATGGCCAAAGAACT
CCAGCCGTATATGTTAAAGGAAGCACTGTACAATGTTCGGCAGTATGAGATCTTCCTGCAGACTGTTTTG
TCAGATATAATTACTTGTGCTGAGGAAGTAGAGATGATGATAAAACAATTAGCAGCCCAACTGGAACAAC
TGAAAATGGCAGTAAAATCTAAGACGGCGGTCCCAACATCCCAAGTCTTCCCCATCTTCGTTGCGCTGGC
GAGTCTGTGGATGAGCTTCCAGGACGAGACGGTTCTGATCAGCGTTCTCAGTAACTTGACCACCAACCTG
GAGCTCTTCCTGGGCACCCACGAGCTCCTCTTTCCCGAGAAAGTGATGCTAGGGCTTCTCGATGGCGTCG
TCGTGAAAAGCGATTTGACGAGGATAGAGGAACACATGGAAGAAAGAGTGGAGTTGGCAGATTTCAGAAC
ACAGGAATGGCTTTTTCCAGAAACAACAGCAAACTTTAACAAACTGTTAATTCAGTATCGTGGATTTTGT
GGCTACACATTTGCTGTGACTGATGGCCTTCTCCTCCCAGGAAATCCAGCCATTGGAATTTTGAAATACA
AAGAAAAATATTATACTTTCAGTACCAGAGATGCTGCATACACATTCGCAGAAAATCCAGACCATTACAT
CCATTTGATTAAGGAGAAAGCCAAGAAGAATGCAGAGTTAATTCAGCTACTAGAACTTCATCAGCAGTTT
GAAACTCTCATACCCTATTCTCAGGTAAACATGGCATTCTCTTGA

Translation (504 aa):
MPPTQAESVIKNIIREIGQECAAHGEIASETVVAFMVKAVVLDPSNGFNMDRTLIKTDVQKLVKLCVARL
LDNKNPSLDTIKMQVYFDMNYTSREDFLEEHHRVLESRLGIVSREITDNRASAREELENLYRKIVSYVLL
RSGLGSPTDIKIVREATAALQSVFPQAELATFLTLSKKDKERQLKELTMIVTGIRLFNRDCGKGGEGIDD
LPAILHEAIPTTTQHIDSQLQIAQDQAFRYTAILEKVTNNPLMAKELQPYMLKEALYNVRQYEIFLQTVL
SDIITCAEEVEMMIKQLAAQLEQLKMAVKSKTAVPTSQVFPIFVALASLWMSFQDETVLISVLSNLTTNL
ELFLGTHELLFPEKVMLGLLDGVVVKSDLTRIEEHMEERVELADFRTQEWLFPETTANFNKLLIQYRGFC
GYTFAVTDGLLLPGNPAIGILKYKEKYYTFSTRDAAYTFAENPDHYIHLIKEKAKKNAELIQLLELHQQF
ETLIPYSQVNMAFS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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