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Report for CCDS18070.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18070.1 Public Mus musculus 4 Sigmar1 23 108 98 CCDS HistoryNCBI Gene:18391Re-query CCDS DB by CCDS ID:18070.1Re-query CCDS DB by GeneID:18391See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18070.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059354.14 ENSMUSP00000056027.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059354.14Link to Ensembl Protein Viewer:ENSMUSP00000056027.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000059354Re-query CCDS DB by Protein ID:ENSMUSP00000056027
Original member Current member NCBI NM_011014.3 NP_035144.1 Accepted alive Link to Nucleotide Sequence:NM_011014.3Link to Protein Sequence:NP_035144.1Re-query CCDS DB by Nucleotide ID:NM_011014Re-query CCDS DB by Protein ID:NP_035144Link to BLAST:NP_035144.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035144.1 223 O55242-1 223 100% 0 0

Chromosomal Locations for CCDS 18070.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 41739354 41739580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41740550 41740642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41740776 41740976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41741102 41741252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (672 nt):
ATGCCGTGGGCCGCGGGACGGCGGTGGGCATGGATCACCCTGATTCTGACTATTATCGCAGTGCTGATCC
AGGCCGCCTGGTTGTGGCTGGGCACTCAAAACTTCGTCTTCTCTAGAGAAGAAATAGCGCAGCTTGCTCG
ACAGTATGCGGGGCTGGACCATGAGCTTGCCTTCTCTCGGCTGATCGTGGAGCTGCGGAGGCTGCACCCA
GGCCACGTGCTGCCGGATGAGGAGCTGCAGTGGGTATTTGTGAACGCGGGCGGCTGGATGGGCGCCATGT
GTATTCTGCACGCCTCGCTGTCTGAGTACGTGCTGCTCTTCGGCACCGCCCTGGGCTCCCATGGCCATTC
GGGACGATACTGGGCTGAGATTTCTGACACCATCATCTCTGGCACCTTCCACCAATGGAAAGAGGGCACC
ACGAAAAGTGAGGTCTTCTACCCAGGAGAGACAGTTGTACACGGGCCTGGAGAAGCAACGGCTCTGGAGT
GGGGACCAAACACGTGGATGGTGGAGTACGGCCGGGGTGTTATTCCGTCTACCCTGTTCTTTGCACTAGC
CGACACTTTCTTCAGCACCCAGGACTACCTCACACTCTTCTATACCCTTCGGGCCTATGCCCGGGGCCTC
CGGCTTGAGCTTACCACCTACCTCTTTGGCCAAGACTCCTGA

Translation (223 aa):
MPWAAGRRWAWITLILTIIAVLIQAAWLWLGTQNFVFSREEIAQLARQYAGLDHELAFSRLIVELRRLHP
GHVLPDEELQWVFVNAGGWMGAMCILHASLSEYVLLFGTALGSHGHSGRYWAEISDTIISGTFHQWKEGT
TKSEVFYPGETVVHGPGEATALEWGPNTWMVEYGRGVIPSTLFFALADTFFSTQDYLTLFYTLRAYARGL
RLELTTYLFGQDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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