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Report for CCDS18120.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18120.2 Public Mus musculus 4 Gne 23 108 98 CCDS HistoryNCBI Gene:50798Re-query CCDS DB by CCDS ID:18120.2Re-query CCDS DB by GeneID:50798See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 18120.2
The coding region has been updated to extend the N-terminus to one that is supported by available conservation data. The use of an alternative upstream start codon, would result in a protein that is 31 aa longer at the N-terminal.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 18120.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030201.13 ENSMUSP00000030201.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030201.13Link to Ensembl Protein Viewer:ENSMUSP00000030201.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030201Re-query CCDS DB by Protein ID:ENSMUSP00000030201
Original member Current member NCBI NM_015828.3 NP_056643.3 Accepted alive Link to Nucleotide Sequence:NM_015828.3Link to Protein Sequence:NP_056643.3Re-query CCDS DB by Nucleotide ID:NM_015828Re-query CCDS DB by Protein ID:NP_056643Link to BLAST:NP_056643.3

Chromosomal Locations for CCDS 18120.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 44037118 44037353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44038947 44039063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44040254 44040436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44041663 44041884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44042163 44042292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44044759 44044969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44045903 44045990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44052771 44052983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44055205 44055357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44059776 44060227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44066755 44066960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44084048 44084098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2262 nt):
ATGGAAACACACGCGCATCTCCACAGGGAGCAGAGCTACGCAGGACCTCATGAACTCTATTTTAAGAAAC
TCTCAAGTAAAAAGAAGCAAGTCATGGAGAAGAACGGGAACAACCGAAAGCTCCGGGTTTGCGTTGCCAC
CTGCAACCGAGCTGACTACTCCAAACTGGCCCCGATCATGTTCGGCATCAAGACAGAGCCCGCGTTCTTT
GAGTTGGACGTGGTGGTGCTCGGCTCCCACCTGATTGACGACTATGGAAACACATACCGCATGATTGAGC
AAGATGACTTTGACATTAACACCAGGCTCCACACGATTGTTAGAGGGGAAGATGAAGCGGCCATGGTAGA
GTCGGTAGGCCTAGCGCTCGTGAAGCTACCGGACGTCCTCAATCGCCTGAAGCCCGACATCATGATTGTT
CACGGAGACCGATTTGACGCCCTTGCTCTGGCTACGTCTGCTGCCTTGATGAACATCCGCATCCTTCACA
TTGAAGGAGGCGAGGTCAGCGGGACCATTGATGACTCTATCAGACACGCCATAACAAAACTGGCTCACTA
CCATGTGTGCTGCACTAGAAGTGCAGAGCAGCACCTGATCTCTATGTGCGAGGACCACGACCGCATCCTG
TTGGCAGGCTGCCCTTCCTATGACAAACTGCTCTCCGCCAAGAACAAAGACTATATGAGCATCATTCGGA
TGTGGCTAGGCGATGATGTAAAATGTAAGGATTACATCGTTGCCCTGCAGCATCCCGTGACCACTGACAT
TAAGCATTCCATAAAGATGTTTGAGCTAACACTGGATGCCCTGATCTCGTTTAACAAGAGGACCCTAGTT
CTGTTTCCAAATATCGATGCAGGCAGCAAGGAGATGGTTCGAGTGATGCGGAAGAAGGGCATCGAGCATC
ACCCCAATTTCCGTGCAGTCAAGCACGTCCCGTTTGACCAGTTCATACAGCTGGTCGCCCACGCTGGCTG
CATGATTGGGAATAGCAGCTGCGGCGTGCGAGAGGTTGGCGCTTTCGGAACACCCGTGATCAACCTGGGC
ACAAGGCAGATAGGAAGAGAAACCGGGGAGAATGTTCTTCATGTCAGGGATGCTGACACCCAAGATAAAA
TATTGCAAGCACTACACCTCCAGTTCGGCAAACAGTACCCTTGCTCAAAGATATATGGGGATGGGAATGC
TGTTCCAAGGATTTTAAAGTTTCTCAAATCCATTGACCTTCAAGAGCCACTACAGAAGAAATTCTGCTTC
CCCCCTGTAAAGGAGAACATCTCTCAAGACATTGACCACATCCTGGAAACTCTGAGTGCCTTGGCTGTTG
ATCTTGGCGGGACAAACCTGAGGGTGGCAATAGTTAGCATGAAGGGTGAAATCGTTAAGAAGTACACTCA
GTTCAACCCTAAAACCTATGAAGAAAGGATTAGTTTAATCCTGCAGATGTGTGTGGAAGCTGCCGCGGAA
GCTGTGAAACTCAATTGCAGAATTCTGGGAGTAGGCATCTCCACAGGTGGCCGCGTGAATCCCCAGGAAG
GAGTTGTGCTGCATTCAACCAAGCTGATCCAGGAATGGAACTCCGTGGACCTCAGGACACCCCTCTCCGA
CACCCTGCATCTCCCCGTGTGGGTGGACAATGACGGCAACTGTGCCGCCATGGCAGAGAGGAAGTTCGGC
CAAGGAAAAGGACAGGAGAACTTCGTGACGCTCATCACGGGGACAGGGATCGGTGGGGGGATCATCCACC
AGCACGAACTGATCCACGGCAGCTCCTTCTGCGCGGCGGAGCTCGGCCATCTCGTGGTGTCCCTGGACGG
TCCTGACTGCTCCTGTGGAAGCCATGGGTGCATCGAAGCGTACGCCTCTGGAATGGCCTTGCAGAGGGAA
GCAAAGAAACTCCATGATGAGGACCTGCTCTTGGTGGAAGGGATGTCAGTACCAAAAGACGAAGCTGTGG
GTGCCCTCCATCTCATCCAGGCTGCCAAGCTGGGCAACGTGAAGGCCCAGAGCATCTTACGAACAGCTGG
AACTGCTTTGGGACTTGGGGTTGTGAACATCCTCCACACTATGAATCCTTCCCTGGTGATCCTGTCTGGA
GTCCTGGCCAGTCACTACATCCACATCGTGAAGGACGTCATCCGCCAGCAAGCCTTGTCCTCCGTGCAGG
ATGTGGACGTGGTGGTCTCAGACTTGGTGGACCCGGCCCTGCTTGGCGCAGCCAGCATGGTTCTGGACTA
CACAACGCGCAGGATCCACTAG

Translation (753 aa):
METHAHLHREQSYAGPHELYFKKLSSKKKQVMEKNGNNRKLRVCVATCNRADYSKLAPIMFGIKTEPAFF
ELDVVVLGSHLIDDYGNTYRMIEQDDFDINTRLHTIVRGEDEAAMVESVGLALVKLPDVLNRLKPDIMIV
HGDRFDALALATSAALMNIRILHIEGGEVSGTIDDSIRHAITKLAHYHVCCTRSAEQHLISMCEDHDRIL
LAGCPSYDKLLSAKNKDYMSIIRMWLGDDVKCKDYIVALQHPVTTDIKHSIKMFELTLDALISFNKRTLV
LFPNIDAGSKEMVRVMRKKGIEHHPNFRAVKHVPFDQFIQLVAHAGCMIGNSSCGVREVGAFGTPVINLG
TRQIGRETGENVLHVRDADTQDKILQALHLQFGKQYPCSKIYGDGNAVPRILKFLKSIDLQEPLQKKFCF
PPVKENISQDIDHILETLSALAVDLGGTNLRVAIVSMKGEIVKKYTQFNPKTYEERISLILQMCVEAAAE
AVKLNCRILGVGISTGGRVNPQEGVVLHSTKLIQEWNSVDLRTPLSDTLHLPVWVDNDGNCAAMAERKFG
QGKGQENFVTLITGTGIGGGIIHQHELIHGSSFCAAELGHLVVSLDGPDCSCGSHGCIEAYASGMALQRE
AKKLHDEDLLLVEGMSVPKDEAVGALHLIQAAKLGNVKAQSILRTAGTALGLGVVNILHTMNPSLVILSG
VLASHYIHIVKDVIRQQALSSVQDVDVVVSDLVDPALLGAASMVLDYTTRRIH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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