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Report for CCDS18141.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18141.1 Public Mus musculus 4 Stra6l 23 108 98 CCDS HistoryNCBI Gene:74152Re-query CCDS DB by CCDS ID:18141.1Re-query CCDS DB by GeneID:74152See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18141.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030011.5 ENSMUSP00000030011.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030011.5Link to Ensembl Protein Viewer:ENSMUSP00000030011.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000030011Re-query CCDS DB by Protein ID:ENSMUSP00000030011
Original member Current member EBI ENSMUST00000107783.7 ENSMUSP00000103412.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107783.7Link to Ensembl Protein Viewer:ENSMUSP00000103412.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107783Re-query CCDS DB by Protein ID:ENSMUSP00000103412
Original member Current member NCBI NM_028788.4 NP_083064.2 Accepted alive Link to Nucleotide Sequence:NM_028788.4Link to Protein Sequence:NP_083064.2Re-query CCDS DB by Nucleotide ID:NM_028788Re-query CCDS DB by Protein ID:NP_083064Link to BLAST:NP_083064.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083064.2 621 Q9DBN1-1 621 100% 0 0

Chromosomal Locations for CCDS 18141.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 45849078 45849097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45858147 45858222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45859936 45860036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45864873 45865003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45866175 45866295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45867204 45867249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45869077 45869205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45869560 45869630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45870781 45870892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45873649 45873802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45877909 45877984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45879417 45879498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45879678 45879726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45880168 45880285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45881426 45881545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45882697 45882860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45884542 45884688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45885251 45885399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1866 nt):
ATGCTTGCTGCCAGCACAAGAACCAGGCAGATAAATATCACCTGTGACAACCCAGTGGACCGGGAGGTCT
TCCTCCATTACTCCCTCATTCCATCACTCTGCATCATTTTGGTCTTGTCTTTCCTCCAAAGACGAGAGCA
TCGGAGACAAAGAGATGACACCTCCTACCTCCTGGGGAACCACTTTGGAATCATCGTGCCTCTGGACTTC
GTGGGGACTTTTAGTAACCGATGGTCCTATGGAGCTGCCTTTGGGGCCACAGCCAATAAGGTCATGTTCT
TGTTCTCAGAAGGCTACCAGCCCCTGACGGTTCCTCAGTGGGCCCAAGCCTTTGTGCTTTTCATCGGAGG
CATGGAGGTCGGCCTCTCCTACTTCCCTTTCTTTGCCTGCCTGTCCTCAGAGTTCCAGCTGGTCAGCTCC
ATCCTGGGCTTCAGCTACTCCCTGACCTGGTTTGTGGTTACTGTTCTTCAGATCTCACAGTGTCCCCATG
GGCAGTTTCTGGGGAGGTTCGAGACCCTCGTTTTCTACTGGCCCTCACTGTTGTGCCTGGGTTTCCTGCT
GGGTCGTTTCCTGCACATGTTCCTTAAGGCTCTGCCTGTCCACCTGGGCCTGGAGCCGCAGACAGAAGAA
AAGTCGATGCTGGAAGCCCACCAGGCAAAGCACGTGAAGCAGCTCTTGAGCAAGCCCCGCCCACAAGAAG
GCGAAAAGTCTTGGTTTCAAACCAGGGTGTATGAGTGGGACCCCTGCTTCCAGTTTCCCAGCAGGATGGT
CGGGACCCTGCTGCTGGCGTTCATCTGCCTCTACCTTTTCATCGTCATTGAGTTTTGTGTGTTTCTGCAC
GTGAGAGACAAGCTGGACATGTTTGAAGACAAACTGGAGAGCTACCTCACCCATATGAACGAGACGGGGA
CCTTGACCCCAATCATCTTACAGGTGAAAGAACTGATCAGCGTTACTAAAGGAGTCTGGGTGGTGACCAT
TTTGCCTGCCGCCCTCACATGTGTCACCTATCTCTTCCACATTCTAGCCTGTTACAGAAAGCATATGAAG
AGGCTATGGGCTGGAGACAAACACTTCCTCCCTCAGAAGTTCCACAGTCCCTCTTCAGCAGCAAGTGTGG
TGGCCATTGCAAGGTACTCTGGCTGGCAGATAGCCTACATCCTCTGGGGCTACCTCATCATCCATGTGGT
TCAGAGCCTCTGTGGGGTGATGCTCATGTACGGCCTGGTGCTGCCCATCATCCACCACCGAGGCCTGGAG
ATGCTGCAAGGATTTGGCCTTGGGGTCCTCACCCTGTCCATAGTCGTGGGCCTTATAATCCTACAAGTGT
GGATTGCTGGCACGTTCTTCCTGCAGCCAAAGCTGGGCACATCCGACAAGCAGAAGCCCCTGGCTCTCAA
CAACAGGAGAGCCTTCCACAACTTCAACTACTTCCTGTTTTTCTACAACGTGCTGCTGGGCCTGGGGGCC
TGCCTCTCCAGGCTGCTCATCAGCTGCCTCCTGGGCACTTGGCTGATCGCACGCATCGACAGGACCATCA
TGCAGAGTGGCTATGAGGGTGCAGACATGGGCTTTGGTGCGTGGATTGGTATGCTCTTTGTGGATCACTA
CCACACCAACCCTGTGTTGGTCAGCTTTTGCCACATTCTGATCACAAGCCACAAGGACAGGAAGCTGCAG
AAGACTGTGAAATACTGGTGCCTGAACCAGTCAGCAGGTCCCCGCTTCTCGGCCAGAGCCAGAACGAGGT
GGTTCCTGCTGCAGACGCTGATCAACAATCCCAGGCTTGTCATGCTCAGAAAATCAAAATCAGGTCATAG
TTCGGGCGAGTTCACACAGATTCTGTTGACCTGCTCAGACTGCTGA

Translation (621 aa):
MLAASTRTRQINITCDNPVDREVFLHYSLIPSLCIILVLSFLQRREHRRQRDDTSYLLGNHFGIIVPLDF
VGTFSNRWSYGAAFGATANKVMFLFSEGYQPLTVPQWAQAFVLFIGGMEVGLSYFPFFACLSSEFQLVSS
ILGFSYSLTWFVVTVLQISQCPHGQFLGRFETLVFYWPSLLCLGFLLGRFLHMFLKALPVHLGLEPQTEE
KSMLEAHQAKHVKQLLSKPRPQEGEKSWFQTRVYEWDPCFQFPSRMVGTLLLAFICLYLFIVIEFCVFLH
VRDKLDMFEDKLESYLTHMNETGTLTPIILQVKELISVTKGVWVVTILPAALTCVTYLFHILACYRKHMK
RLWAGDKHFLPQKFHSPSSAASVVAIARYSGWQIAYILWGYLIIHVVQSLCGVMLMYGLVLPIIHHRGLE
MLQGFGLGVLTLSIVVGLIILQVWIAGTFFLQPKLGTSDKQKPLALNNRRAFHNFNYFLFFYNVLLGLGA
CLSRLLISCLLGTWLIARIDRTIMQSGYEGADMGFGAWIGMLFVDHYHTNPVLVSFCHILITSHKDRKLQ
KTVKYWCLNQSAGPRFSARARTRWFLLQTLINNPRLVMLRKSKSGHSSGEFTQILLTCSDC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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