NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18158.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18158.1 Public Mus musculus 4 Galnt12 23 108 98 CCDS HistoryNCBI Gene:230145Re-query CCDS DB by CCDS ID:18158.1Re-query CCDS DB by GeneID:230145See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18158.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045041.11 ENSMUSP00000045721.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045041.11Link to Ensembl Protein Viewer:ENSMUSP00000045721.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000045041Re-query CCDS DB by Protein ID:ENSMUSP00000045721
Original member Current member NCBI NM_172693.4 NP_766281.1 Accepted alive Link to Nucleotide Sequence:NM_172693.4Link to Protein Sequence:NP_766281.1Re-query CCDS DB by Nucleotide ID:NM_172693Re-query CCDS DB by Protein ID:NP_766281Link to BLAST:NP_766281.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766281.1 576 Q8BGT9 576 100% 0 0

Chromosomal Locations for CCDS 18158.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 47091973 47092328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47104100 47104269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47108391 47108580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47111456 47111641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47112322 47112439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47113728 47113904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47117904 47118035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47119515 47119628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47120362 47120508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 47122437 47122577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1731 nt):
ATGTGGGGGCGTGCGGTGAGGAGGCGCTGCCCGCGGGGGCTGCGGCGCGGCCGGGAGGCGTTGCTGGCAC
TGCTGGCCCTGGCAGGGCTGGGCGCGCTGCTGCGGGCTCGAAGCAGGTCGGGGACGGTGGACCCGGGACC
CCCGCGGACTCCTCTCCCCGGGCGTCACGAGCCAGTGCTGCCCAGGCCGCCGCTGCCCGCCGATGCTCTG
GGAGCGCATGGGGAGGCGGTGCGGCTGCAGCTGCAGGGCGAGGAGCTGCGGCTGCAGGAGGAGAGCGTGA
AGCAGCACCAGATCAACATCTATCTGAGCGACCGTATCTCGCTGCACCGCCGACTGCCCGAGCGCTGGAA
CCCTCTGTGCAGAGAGGTGAAATACGATTATGATAACCTGCCCAAGACTTCTGTTGTCATAGCATTTTAT
AATGAAGCCTGGTCCACACTCCTTCGGACAGTTTACAGTGTTCTTGAGACCTCCCCTGACATCCTGCTGG
AGGAGGTCATTCTGGTAGATGACTACAGCGACAGAGAGCACCTAAAGGAACGCTTGGCCAACGAGCTGTC
ACAGCTCCCCAAGGTGCGCCTGATCCGTGCTAGCAGGAGAGAGGGCCTAGTGCGAGCCCGGCTACTGGGA
GCCTCTGCGGCCAGGGGCGAAGTGCTGACCTTCCTAGACTGTCACTGTGAATGTCATGAGGGGTGGCTGG
AGCCTCTGCTGCAGAGGATCCACGAGAAGGAGTCCGCAGTCGTGTGCCCTGTTATCGATGTGATTGACTG
GAACACCTTTGAGTACCTGGGCAACTCGGGAGAGCCGCAGATTGGCGGCTTTGACTGGCGGCTGGTATTC
ACGTGGCACGTGGTTCCCCAGCGGGAGCGGCAGTCGATGCGGTCGCCGATCGATGTTATCAGGTCTCCAA
CTATGGCTGGGGGCCTGTTTGCTGTGAGTAAGAGATATTTTGATTATCTGGGGTCTTACGATACAGGAAT
GGAAGTCTGGGGAGGAGAAAACCTTGAGTTCTCCTTTAGGATCTGGCAGTGTGGTGGCACTCTGGAAACG
CACCCGTGCTCCCATGTGGGCCACGTCTTCCCTAAGCAAGCTCCCTATTCCCGTAGCAAGGCCCTGGCCA
ACAGTGTCCGAGCTGCAGAAGTGTGGATGGATGAATTTAAAGAACTCTACTACCACCGCAATCCCCAGGC
CCGCCTGGAACCCTTTGGGGACGTGACAGAGAGGAAGAAGCTTCGGGCTAAGCTCCAGTGTAAAGACTTC
AAGTGGTTCTTAGATACAGTGTACCCAGAATTGCACGTGCCAGAGGACAGGCCTGGCTTCTTTGGGATGC
TCCAGAACAGAGGCCTAAGAGGGTACTGCCTTGACTACAATCCTCCCAATGAAAACCATGTTGAAGGCCA
CCAGGTCCTTCTGTACCTCTGCCATGGGATGGGTCAGAACCAGTTTTTCGAGTATACGACCCGGAAAGAA
ATACGCTATAACACCCGCCAGCCCGAAGCCTGCATCACCGTGGAGGACGGGAAGGATACCCTTGTCATGG
ATCTCTGCCGAGAGACCGTCCCAGAGAACCAGGAGTTCATCCTACAGGAGGATGGCACTTTAGTTCACAA
GCACAGCAGGAAATGTGTGGAGGCCACAGAGAAGGTGTTAGACAACGGCTTTGCACCATACTTACGGGAC
TGTACCAACTCAGATAACCAGAGGTGGTTCTTCAAGGAGCGCATGTCGTAG

Translation (576 aa):
MWGRAVRRRCPRGLRRGREALLALLALAGLGALLRARSRSGTVDPGPPRTPLPGRHEPVLPRPPLPADAL
GAHGEAVRLQLQGEELRLQEESVKQHQINIYLSDRISLHRRLPERWNPLCREVKYDYDNLPKTSVVIAFY
NEAWSTLLRTVYSVLETSPDILLEEVILVDDYSDREHLKERLANELSQLPKVRLIRASRREGLVRARLLG
ASAARGEVLTFLDCHCECHEGWLEPLLQRIHEKESAVVCPVIDVIDWNTFEYLGNSGEPQIGGFDWRLVF
TWHVVPQRERQSMRSPIDVIRSPTMAGGLFAVSKRYFDYLGSYDTGMEVWGGENLEFSFRIWQCGGTLET
HPCSHVGHVFPKQAPYSRSKALANSVRAAEVWMDEFKELYYHRNPQARLEPFGDVTERKKLRAKLQCKDF
KWFLDTVYPELHVPEDRPGFFGMLQNRGLRGYCLDYNPPNENHVEGHQVLLYLCHGMGQNQFFEYTTRKE
IRYNTRQPEACITVEDGKDTLVMDLCRETVPENQEFILQEDGTLVHKHSRKCVEATEKVLDNGFAPYLRD
CTNSDNQRWFFKERMS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH