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Report for CCDS18177.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18177.1 Public Mus musculus 4 Pgap4 23 108 98 CCDS HistoryNCBI Gene:67063Re-query CCDS DB by CCDS ID:18177.1Re-query CCDS DB by GeneID:67063See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18177.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042750.2 ENSMUSP00000040885.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042750.2Link to Ensembl Protein Viewer:ENSMUSP00000040885.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000042750Re-query CCDS DB by Protein ID:ENSMUSP00000040885
Original member Current member NCBI NM_001355503.1 NP_001342432.1 Accepted alive Link to Nucleotide Sequence:NM_001355503.1Link to Protein Sequence:NP_001342432.1Re-query CCDS DB by Nucleotide ID:NM_001355503Re-query CCDS DB by Protein ID:NP_001342432Link to BLAST:NP_001342432.1
Original member Current member NCBI NM_025944.4 NP_080220.2 Accepted alive Link to Nucleotide Sequence:NM_025944.4Link to Protein Sequence:NP_080220.2Re-query CCDS DB by Nucleotide ID:NM_025944Re-query CCDS DB by Protein ID:NP_080220Link to BLAST:NP_080220.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342432.1 403 Q91YV9 403 100% 0 0
NP_080220.2 403 Q91YV9 403 100% 0 0

Chromosomal Locations for CCDS 18177.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 49585955 49587166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1212 nt):
ATGACCACGTCAACCTCTCCAGCTGCCATGCTTCTCCGGAGGCTTCGGCGACTCTCCTGGGGCAGCACAG
CT
GTGCAGCTCTTCATTCTAACCGTGGTGACATTTGGCTTACTGGCCCCGCTGGCCTGCCACCGGCTCCT
C
CACTCATATTTCTATCTGCGTCATTGGCATCTAAACCAGATGAGCCAGGACTTCCTGCAGCAGAGCCTG
AAG
GAGGGGGAAGCTGCCCTTCACTACTTTGAAGAGCTGCCCTCTGCCAATGGGTCTGTGCCCATCGTCT
GG
CAGGCCACTCCCCGCCCCTGGCTGGTGATTACCATAATCACTGTGGATAGGCAGCCTGGCTTTCATTA
T
GTCTTACAGGTAGTATCCCAGTTCCATCGGCTTCTGCAGCAGTGCGGCCCCCAGTGTGAAGGGCACCAG
CTC
TTCCTGTGCAATGTGGAACGGAGTGTGAGCCATTTTGATGCTAAGCTGCTCTCTAAGTACGTCCCTG
TG
GCCAACCGCTACGAGGGCACCGAAGACGATTACGGTGATGACCCTTCCACTAACTCATTTGAGAAAGA
G
AAGCAAGACTATGTGTATTGCCTGGAGTCATCGCTGCAAACCTACAATCCAGACTATGTCCTGATGGTG
GAG
GATGATGCTATTCCAGAAGAACAGATCTTCCCAGTATTGGAGCACCTCCTGCGTGCTCGCTTCTCTG
AG
CCACACCTCCAAGATGCCCTGTATCTAAAGCTCTATCACCCAGAGAGGCTACAGCACTACATCAACCC
A
GAGCCTATGCGGATCCTGGAGTGGGTTGGTGTGGGCATGCTGCTGGGGCCTGTGCTAACCTGGATCTAC
ATG
AGGTTTGCCTGCCGCCCAGGCTTCAGCTGGCCTGTCATGCTTTTCTTCTGTCTCTACAGCATGGGGC
TG
GTGGAACTGGTGGGCCGACACTATTTTCTGGAACTGCGGCGCCTGAGTCCCTCCTTGTACAGTGTGGT
T
CCTGCCTCTCAGTGTTGTACCCCGGCTATGCTCTTCCCTGCCCCTGCTGCCCGCAGGACCCTCACCTAC
CTG
TCCCAGGTGTACTGCCACAAGGGCTTTGGCAAAGACATGGCACTGTACTCTCTGCTGAGAGCCAAGG
GG
GAGAGGGCCTATGTGGTGGAGCCCAACCTTGTGAAACACATTGGGCTCTTCTCCAGCCTACGGTACAA
T
TTTCATCCCAGCCTACTGTAG


Translation (403 aa):
MTTSTSPAAMLLRRLRRLSWGSTAVQLFILTVVTFGLLAPLACHRLLHSYFYLRHWHLNQMSQDFLQQSL
K
EGEAALHYFEELPSANGSVPIVWQATPRPWLVITIITVDRQPGFHYVLQVVSQFHRLLQQCGPQCEGHQ
L
FLCNVERSVSHFDAKLLSKYVPVANRYEGTEDDYGDDPSTNSFEKEKQDYVYCLESSLQTYNPDYVLMV
E
DDAIPEEQIFPVLEHLLRARFSEPHLQDALYLKLYHPERLQHYINPEPMRILEWVGVGMLLGPVLTWIY
M
RFACRPGFSWPVMLFFCLYSMGLVELVGRHYFLELRRLSPSLYSVVPASQCCTPAMLFPAPAARRTLTY
L
SQVYCHKGFGKDMALYSLLRAKGERAYVVEPNLVKHIGLFSSLRYNFHPSLL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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