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Report for CCDS18179.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18179.1 Public Mus musculus 4 Ppp3r2 23 108 98 CCDS HistoryNCBI Gene:19059Re-query CCDS DB by CCDS ID:18179.1Re-query CCDS DB by GeneID:19059See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18179.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029991.2 ENSMUSP00000029991.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029991.2Link to Ensembl Protein Viewer:ENSMUSP00000029991.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000029991Re-query CCDS DB by Protein ID:ENSMUSP00000029991
Original member Current member NCBI NM_001004025.4 NP_001004025.1 Accepted alive Link to Nucleotide Sequence:NM_001004025.4Link to Protein Sequence:NP_001004025.1Re-query CCDS DB by Nucleotide ID:NM_001004025Re-query CCDS DB by Protein ID:NP_001004025Link to BLAST:NP_001004025.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004025.1 179 Q63811 179 100% 0 0

Chromosomal Locations for CCDS 18179.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 49681157 49681187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49681440 49681948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (540 nt):
ATGGGAAATGAGGCCAGCTACCAAACTGAGCTGTGCAACCACTTCGACCAGGAAGAGATAAGAAGGCTGG
GT
AAAAGCTTCAGGAAGCTGGACTTGGACAAATCGGGCTCCCTGAGCATAGAAGAGTTCATGAGGCTGCC
T
GAGCTGCAGCAGAATCCGCTGGTGGGCCGAGTGATCGACATCTTCGACACAGACGGCAACGGGGAAGTG
GAC
TTCCACGAGTTCATCGTGGGCACCTCCCAGTTCAGCGTCAAGGGTGATGAAGAGCAGAAGCTAAGGT
TC
GCCTTCAGAATCTACGACATGGATAATGATGGCTTCATCTCCAATGGGGAGCTCTTCCAGGTGCTTAA
G
ATGATGGTGGGAAACAACCTCAAGGACTGGCAGCTGCAGCAGCTGGTGGACAAGAGCATCTTGGTCCTG
GAT
AAGGATGGCGATGGCCGGATATCCTTTGAAGAGTTCAGTGATGTGGTCAAGACCATGGAGATCCACA
AG
AAATTGGTCGTGTTTGTAGAACACGGTCAAGAAGACTTAAAAGCTTAA


Translation (179 aa):
MGNEASYQTELCNHFDQEEIRRLGKSFRKLDLDKSGSLSIEEFMRLPELQQNPLVGRVIDIFDTDGNGEV
D
FHEFIVGTSQFSVKGDEEQKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDWQLQQLVDKSILVL
D
KDGDGRISFEEFSDVVKTMEIHKKLVVF
VEHGQEDLKA



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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