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Report for CCDS18191.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18191.1 Public Mus musculus 4 Fktn 23 108 98 CCDS HistoryNCBI Gene:246179Re-query CCDS DB by CCDS ID:18191.1Re-query CCDS DB by GeneID:246179See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18191.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061771.8 ENSMUSP00000061489.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061771.8Link to Ensembl Protein Viewer:ENSMUSP00000061489.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000061771Re-query CCDS DB by Protein ID:ENSMUSP00000061489
Original member Current member EBI ENSMUST00000128667.7 ENSMUSP00000114699.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000128667.7Link to Ensembl Protein Viewer:ENSMUSP00000114699.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000128667Re-query CCDS DB by Protein ID:ENSMUSP00000114699
Original member Current member NCBI NM_139309.5 NP_647470.1 Accepted alive Link to Nucleotide Sequence:NM_139309.5Link to Protein Sequence:NP_647470.1Re-query CCDS DB by Nucleotide ID:NM_139309Re-query CCDS DB by Protein ID:NP_647470Link to BLAST:NP_647470.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_647470.1 461 Q8R507 461 100% 0 0

Chromosomal Locations for CCDS 18191.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 53720105 53720209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53729980 53730039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53731132 53731335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53734850 53735127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53737527 53737659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53744619 53744748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53747009 53747142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53748369 53748496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 53761174 53761387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1386 nt):
ATGAGTAGAATCAATAAGAACGTGGTCTTGGCCCTTTTAACATTGACGAGTTCTGCCTTTCTGCTGTTTC
AGCTGTACTACTACAAGCACTATTTGTCTGCAAGGAATGGACCGGGTTCATCAAAATCCAAAGGGAATCG
AGTTGGATTTGATAGCACACAGTGGCGTGCAGTTAAGAAATTTATTATGCTGACATCCAGCCAAAATGTG
CCAGTGTTCCTTATTGACCCATGGATTCTGGAATCAATTAATAAAAACTTCGAACAAGTGAAAAATGCTT
CTCAAGGCCCGGCTTCAGAATGCAGATTTTTCTGTGTTCCGAGAGACTTCACTGCGTTCGCACTGCAGTA
TCACCTGTGGAAGAATGAGGATGGCTGGTTTCGGATAGCTGAGAATATGGGGTTTCAATGCCTAAAGACT
GAAAGCAAGGATCCTCGGCTAGATGGAATAGACTCACTTTCTGGGACTGAAATCCCTCTGCACTACGTCT
GTAAGCTGACCACTCATGCCATCCACTTGGTAGTCTTTCATGAGAGGAGTGGCAACTACCTCTGGCATGG
TCACCTACGACTCAAAGGACACATGGATAGGAAGTTTGTTCCTTTTCGAAAGTTACAGTTTGGTCGTTAT
CCTGGAGCCTTTGACAGGCCAGAGTTACAGCAAGTTACTGTTGATGGACTAGATATGCTTATTCCGAAAG
ACCCAGGGCGCTTTCTAGAAGAAGTACCTCACTCCAGATTTATCGAGTGCAGGTATAAGGAAGCTCGGGC
GTTCCTCCAGCAGTACATTGATGATAATACTGTGGATGCTATGGTCTTTCGAAAGAGGGCAAAGGAGTTA
CTGCAACTAGCAGCCAAGACGCTGAAGGACCTGGGAGTGCCCTTCTGGCTGAGCAGTGGGACTTGTCTAG
GATGGTATCGGCAGTGCGGTATTATTCCTTACAGCAAAGATGTCGACTTAGGGATTTTTATACAAGATTA
CAAACCTGATATTATTTTGGCATTTCAGGAAGCAGGACTTCCACTCAAACACAAGTTTGGGAAGGTGGAA
GACAGCTTGGAACTATCCTTCCAGGGGAAAAATGATGTAAAACTTGATATTTTTTTCTTCTATGAAGAGG
CTGACCATCTGTGGAATGGAGGCACGCAGGCCAGAACGGGAAAAAAGTTTAAGTATCTGTTTCCCAAGTT
TACACTGTGCTGGACTGAGTTTGTAGACATCAAAGTGCATGTTCCCTGTGAAACGGTTGACTACATTGAA
GCCAACTATGGTAAGACCTGGAAGATTCCTATCAAGACATGGGACTGGAAGAGCTCACCCCCGAATGTGC
AGCCCAATGGCATCTGGCCTATTTCGGAGTGGGATGAGGTTATCCAGTTGTACTGA

Translation (461 aa):
MSRINKNVVLALLTLTSSAFLLFQLYYYKHYLSARNGPGSSKSKGNRVGFDSTQWRAVKKFIMLTSSQNV
PVFLIDPWILESINKNFEQVKNASQGPASECRFFCVPRDFTAFALQYHLWKNEDGWFRIAENMGFQCLKT
ESKDPRLDGIDSLSGTEIPLHYVCKLTTHAIHLVVFHERSGNYLWHGHLRLKGHMDRKFVPFRKLQFGRY
PGAFDRPELQQVTVDGLDMLIPKDPGRFLEEVPHSRFIECRYKEARAFLQQYIDDNTVDAMVFRKRAKEL
LQLAAKTLKDLGVPFWLSSGTCLGWYRQCGIIPYSKDVDLGIFIQDYKPDIILAFQEAGLPLKHKFGKVE
DSLELSFQGKNDVKLDIFFFYEEADHLWNGGTQARTGKKFKYLFPKFTLCWTEFVDIKVHVPCETVDYIE
ANYGKTWKIPIKTWDWKSSPPNVQPNGIWPISEWDEVIQLY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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