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Report for CCDS18192.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18192.1 Public Mus musculus 4 Tal2 23 108 98 CCDS HistoryNCBI Gene:21350Re-query CCDS DB by CCDS ID:18192.1Re-query CCDS DB by GeneID:21350See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18192.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030124.3 ENSMUSP00000030124.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030124.3Link to Ensembl Protein Viewer:ENSMUSP00000030124.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000030124Re-query CCDS DB by Protein ID:ENSMUSP00000030124
Original member Current member NCBI NM_009317.4 NP_033343.1 Accepted alive Link to Nucleotide Sequence:NM_009317.4Link to Protein Sequence:NP_033343.1Re-query CCDS DB by Nucleotide ID:NM_009317Re-query CCDS DB by Protein ID:NP_033343Link to BLAST:NP_033343.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033343.1 108 Q62282 108 100% 0 0

Chromosomal Locations for CCDS 18192.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 53785821 53786147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (327 nt):
ATGACCAGAAAGATCTTCACAAATACCAGGGAGCGGTGGAGGCAGCAGAGTGTCAACAATGCCTTTGCCA
AG
CTGAGGAAACTTATCCCTACTCACCCTCCAGACAAGAAGCTGAGCAAGAACGAGACGCTTCGCTTGGC
A
ATGAGGTATATCAACTTCTTGGTCAAGGTCTTGGGAGAGCAAAGCCTGCATCAAACAGGAGTCGCTGCT
CAG
GGAAACATTCTGGGGCTCTTTCCCCCAAAGACCCGCCTGCCAGATGAGGATGACAGAACTCTACTGA
AT
GACTACCGAGTTCCTTCCCCTGGCCCAAGCCACGGGGCTCCCTAA


Translation (108 aa):
MTRKIFTNTRERWRQQSVNNAFAKLRKLIPTHPPDKKLSKNETLRLAMRYINFLVKVLGEQSLHQTGVAA
Q
GNILGLFPPKTRLPDEDDRTLLNDYRVPSPGPSHGAP




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser