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Report for CCDS18207.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18207.1 Public Mus musculus 4 Txn1 23 108 98 CCDS HistoryNCBI Gene:22166Re-query CCDS DB by CCDS ID:18207.1Re-query CCDS DB by GeneID:22166See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18207.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030051.5 ENSMUSP00000030051.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030051.5Link to Ensembl Protein Viewer:ENSMUSP00000030051.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000030051Re-query CCDS DB by Protein ID:ENSMUSP00000030051
Original member Current member NCBI NM_011660.3 NP_035790.1 Accepted alive Link to Nucleotide Sequence:NM_011660.3Link to Protein Sequence:NP_035790.1Re-query CCDS DB by Nucleotide ID:NM_011660Re-query CCDS DB by Protein ID:NP_035790Link to BLAST:NP_035790.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035790.1 105 P10639 105 100% 0 0

Chromosomal Locations for CCDS 18207.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 57943905 57943967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57945147 57945212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57950839 57950898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57951797 57951901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 57956187 57956210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (318 nt):
ATGGTGAAGCTGATCGAGAGCAAGGAAGCTTTTCAGGAGGCCCTGGCCGCCGCGGGAGACAAGCTTGTCG
TGGTGGACTTCTCTGCTACGTGGTGTGGACCTTGCAAAATGATCAAGCCCTTCTTCCATTCCCTCTGTGA
CAAGTATTCCAATGTGGTGTTCCTTGAAGTGGATGTGGATGACTGCCAGGATGTTGCTGCAGACTGTGAA
GTCAAATGCATGCCGACCTTCCAGTTTTATAAAAAGGGTCAAAAGGTGGGGGAGTTCTCCGGTGCTAACA
AGGAAAAGCTTGAAGCCTCTATTACTGAATATGCCTAA

Translation (105 aa):
MVKLIESKEAFQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCE
VKCMPTFQFYKKGQKVGEFSGANKEKLEASITEYA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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