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Report for CCDS18271.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18271.1 Public Mus musculus 4 Tlr4 23 108 98 CCDS HistoryNCBI Gene:21898Re-query CCDS DB by CCDS ID:18271.1Re-query CCDS DB by GeneID:21898See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18271.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048096.11 ENSMUSP00000045770.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048096.11Link to Ensembl Protein Viewer:ENSMUSP00000045770.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000048096Re-query CCDS DB by Protein ID:ENSMUSP00000045770
Original member Current member NCBI NM_021297.3 NP_067272.1 Accepted alive Link to Nucleotide Sequence:NM_021297.3Link to Protein Sequence:NP_067272.1Re-query CCDS DB by Nucleotide ID:NM_021297Re-query CCDS DB by Protein ID:NP_067272Link to BLAST:NP_067272.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067272.1 835 Q9QUK6 835 100% 0 0

Chromosomal Locations for CCDS 18271.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 66827832 66827921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 66833894 66834060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 66839229 66841479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2508 nt):
ATGATGCCTCCCTGGCTCCTGGCTAGGACTCTGATCATGGCACTGTTCTTCTCCTGCCTGACACCAGGAA
GCTTGAATCCCTGCATAGAGGTAGTTCCTAATATTACCTACCAATGCATGGATCAGAAACTCAGCAAAGT
CCCTGATGACATTCCTTCTTCAACCAAGAACATAGATCTGAGCTTCAACCCCTTGAAGATCTTAAAAAGC
TATAGCTTCTCCAATTTTTCAGAACTTCAGTGGCTGGATTTATCCAGGTGTGAAATTGAAACAATTGAAG
ACAAGGCATGGCATGGCTTACACCACCTCTCAAACTTGATACTGACAGGAAACCCTATCCAGAGTTTTTC
CCCAGGAAGTTTCTCTGGACTAACAAGTTTAGAGAATCTGGTGGCTGTGGAGACAAAATTGGCCTCTCTA
GAAAGCTTCCCTATTGGACAGCTTATAACCTTAAAGAAACTCAATGTGGCTCACAATTTTATACATTCCT
GTAAGTTACCTGCATATTTTTCCAATCTGACGAACCTAGTACATGTGGATCTTTCTTATAACTATATTCA
AACTATTACTGTCAACGACTTACAGTTTCTACGTGAAAATCCACAAGTCAATCTCTCTTTAGACATGTCT
TTGAACCCAATTGACTTCATTCAAGACCAAGCCTTTCAGGGAATTAAGCTCCATGAACTGACTCTAAGAG
GTAATTTTAATAGCTCAAATATAATGAAAACTTGCCTTCAAAACCTGGCTGGTTTACACGTCCATCGGTT
GATCTTGGGAGAATTTAAAGATGAAAGGAATCTGGAAATTTTTGAACCCTCTATCATGGAAGGACTATGT
GATGTGACCATTGATGAGTTCAGGTTAACATATACAAATGATTTTTCAGATGATATTGTTAAGTTCCATT
GCTTGGCGAATGTTTCTGCAATGTCTCTGGCAGGTGTATCTATAAAATATCTAGAAGATGTTCCTAAACA
TTTCAAATGGCAATCCTTATCAATCATTAGATGTCAACTTAAGCAGTTTCCAACTCTGGATCTACCCTTT
CTTAAAAGTTTGACTTTAACTATGAACAAAGGGTCTATCAGTTTTAAAAAAGTGGCCCTACCAAGTCTCA
GCTATCTAGATCTTAGTAGAAATGCACTGAGCTTTAGTGGTTGCTGTTCTTATTCTGATTTGGGAACAAA
CAGCCTGAGACACTTAGACCTCAGCTTCAATGGTGCCATCATTATGAGTGCCAATTTCATGGGTCTAGAA
GAGCTGCAGCACCTGGATTTTCAGCACTCTACTTTAAAAAGGGTCACAGAATTCTCAGCGTTCTTATCCC
TTGAAAAGCTACTTTACCTTGACATCTCTTATACTAACACCAAAATTGACTTCGATGGTATATTTCTTGG
CTTGACCAGTCTCAACACATTAAAAATGGCTGGCAATTCTTTCAAAGACAACACCCTTTCAAATGTCTTT
GCAAACACAACAAACTTGACATTCCTGGATCTTTCTAAATGTCAATTGGAACAAATATCTTGGGGGGTAT
TTGACACCCTCCATAGACTTCAATTATTAAATATGAGTCACAACAATCTATTGTTTTTGGATTCATCCCA
TTATAACCAGCTGTATTCCCTCAGCACTCTTGATTGCAGTTTCAATCGCATAGAGACATCTAAAGGAATA
CTGCAACATTTTCCAAAGAGTCTAGCCTTCTTCAATCTTACTAACAATTCTGTTGCTTGTATATGTGAAC
ATCAGAAATTCCTGCAGTGGGTCAAGGAACAGAAGCAGTTCTTGGTGAATGTTGAACAAATGACATGTGC
AACACCTGTAGAGATGAATACCTCCTTAGTGTTGGATTTTAATAATTCTACCTGTTATATGTACAAGACA
ATCATCAGTGTGTCAGTGGTCAGTGTGATTGTGGTATCCACTGTAGCATTTCTGATATACCACTTCTATT
TTCACCTGATACTTATTGCTGGCTGTAAAAAGTACAGCAGAGGAGAAAGCATCTATGATGCATTTGTGAT
CTACTCGAGTCAGAATGAGGACTGGGTGAGAAATGAGCTGGTAAAGAATTTAGAAGAAGGAGTGCCCCGC
TTTCACCTCTGCCTTCACTACAGAGACTTTATTCCTGGTGTAGCCATTGCTGCCAACATCATCCAGGAAG
GCTTCCACAAGAGCCGGAAGGTTATTGTGGTAGTGTCTAGACACTTTATTCAGAGCCGTTGGTGTATCTT
TGAATATGAGATTGCTCAAACATGGCAGTTTCTGAGCAGCCGCTCTGGCATCATCTTCATTGTCCTTGAG
AAGGTTGAGAAGTCCCTGCTGAGGCAGCAGGTGGAATTGTATCGCCTTCTTAGCAGAAACACCTACCTGG
AATGGGAGGACAATCCTCTGGGGAGGCACATCTTCTGGAGAAGACTTAAAAATGCCCTATTGGATGGAAA
AGCCTCGAATCCTGAGCAAACAGCAGAGGAAGAACAAGAAACGGCAACTTGGACCTGA

Translation (835 aa):
MMPPWLLARTLIMALFFSCLTPGSLNPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKS
YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASL
ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS
LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC
DVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPF
LKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLE
ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF
ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI
LQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDFNNSTCYMYKT
IISVSVVSVIVVSTVAFLIYHFYFHLILIAGCKKYSRGESIYDAFVIYSSQNEDWVRNELVKNLEEGVPR
FHLCLHYRDFIPGVAIAANIIQEGFHKSRKVIVVVSRHFIQSRWCIFEYEIAQTWQFLSSRSGIIFIVLE
KVEKSLLRQQVELYRLLSRNTYLEWEDNPLGRHIFWRRLKNALLDGKASNPEQTAEEEQETATWT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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