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Report for CCDS1829.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1829.1 Public Homo sapiens 2 CRIPT 24 110 108 CCDS HistoryNCBI Gene:9419Re-query CCDS DB by CCDS ID:1829.1Re-query CCDS DB by GeneID:9419See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1829.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000238892.4 ENSP00000238892.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000238892.4Link to Ensembl Protein Viewer:ENSP00000238892.3Re-query CCDS DB by Nucleotide ID:ENST00000238892Re-query CCDS DB by Protein ID:ENSP00000238892
Original member Current member NCBI NM_014171.6 NP_054890.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014171.6Link to Protein Sequence:NP_054890.1Re-query CCDS DB by Nucleotide ID:NM_014171Re-query CCDS DB by Protein ID:NP_054890Link to BLAST:NP_054890.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_054890.1 101 Q9P021 101 100% 0 0

Chromosomal Locations for CCDS 1829.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 46617283 46617298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 46618773 46618838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 46619627 46619681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 46623764 46623867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 46624163 46624227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (306 nt):
ATGGTGTGCGAAAAATGTGAAAAGAAACTTGGTACTGTTATCACTCCAGATACATGGAAAGATGGTGCTA
GGAATACCACAGAAAGTGGTGGAAGAAAGCTGAATGAAAATAAAGCTTTGACTTCAAAAAAAGCAAGATT
TGATCCATATGGAAAGAATAAGTTCTCCACTTGTAGAATTTGTAAAAGTTCTGTGCACCAACCAGGTTCT
CATTACTGCCAGGGCTGTGCCTACAAAAAAGGCATCTGTGCGATGTGTGGAAAAAAGGTTTTGGATACCA
AAAACTACAAGCAAACATCTGTCTAG

Translation (101 aa):
MVCEKCEKKLGTVITPDTWKDGARNTTESGGRKLNENKALTSKKARFDPYGKNKFSTCRICKSSVHQPGS
HYCQGCAYKKGICAMCGKKVLDTKNYKQTSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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