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Report for CCDS18356.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18356.1 Public Mus musculus 4 Elavl2 23 108 98 CCDS HistoryNCBI Gene:15569Re-query CCDS DB by CCDS ID:18356.1Re-query CCDS DB by GeneID:15569See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18356.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107110.7 ENSMUSP00000102727.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107110.7Link to Ensembl Protein Viewer:ENSMUSP00000102727.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107110Re-query CCDS DB by Protein ID:ENSMUSP00000102727
Original member Current member NCBI NM_207686.1 NP_997569.1 Accepted alive Link to Nucleotide Sequence:NM_207686.1Link to Protein Sequence:NP_997569.1Re-query CCDS DB by Nucleotide ID:NM_207686Re-query CCDS DB by Protein ID:NP_997569Link to BLAST:NP_997569.1

Chromosomal Locations for CCDS 18356.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 91253240 91253570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 91260761 91260986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 91263992 91264145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 91281214 91281317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 91308611 91308839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1044 nt):
ATGGAAACACAACTGTCTAATGGGCCAACTTGCAATAACACAGCCAATGGTCCAACCACTGTAAACAACA
ACTGCTCCTCACCAGTTGACTCCGGGAACACAGAGGACAGCAAGACCAACCTAATAGTCAACTACCTTCC
TCAGAACATGACACAGGAAGAACTAAAGAGTCTTTTTGGGAGCATTGGCGAGATAGAGTCCTGTAAGCTT
GTAAGAGACAAAATAACAGGGCAGAGCTTGGGTTACGGATTTGTGAACTACATTGACCCCAAGGATGCAG
AGAAAGCTATCAACACTCTGAATGGATTGAGACTTCAAACCAAAACAATAAAAGTTTCCTATGCTCGCCC
AAGCTCAGCCTCAATCAGAGATGCAAACTTATACGTCAGCGGGCTTCCAAAAACCATGACCCAGAAGGAG
CTGGAACAGCTGTTTTCACAGTATGGGCGCATCATTACTTCTCGGATTCTTGTCGACCAGGTCACTGGCA
TATCAAGGGGTGTAGGGTTTATTCGATTTGACAAGCGGATTGAGGCAGAAGAAGCTATCAAAGGCCTAAA
TGGCCAGAAACCTCCTGGTGCCACAGAGCCAATCACTGTAAAGTTTGCTAATAATCCAAGCCAAAAAACC
AATCAGGCCATCCTTTCCCAGCTGTACCAGTCTCCAAACAGAAGGTACCCAGGACCGCTAGCTCAGCAGG
CACAGCGTTTTAGTAGGTTTTCTCCAATGACGATCGATGGAATGACCAGTCTGGCTGGAATTAATATTCC
TGGGCACCCTGGAACAGGCTGGTGCATATTTGTGTACAACCTGGCGCCTGATGCAGATGAAAGTATCCTG
TGGCAAATGTTTGGGCCTTTTGGAGCTGTCACCAACGTGAAGGTCATCCGTGACTTTAACACCAATAAGT
GCAAAGGTTTTGGATTTGTGACTATGACAAACTATGATGAGGCGGCCATGGCGATAGCTAGCCTCAATGG
ATACCGCCTGGGAGACAGAGTCCTGCAGGTCTCCTTTAAGACAAACAAAACGCACAAAGCCTAA

Translation (347 aa):
METQLSNGPTCNNTANGPTTVNNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKL
VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKE
LEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKT
NQAILSQLYQSPNRRYPGPLAQQAQRFSRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESIL
WQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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